Implement the method. Impelemtn the tests #575
Workflow file for this run
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| name: CI | |
| on: [push] | |
| jobs: | |
| Lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: 'true' | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache: "pipenv" | |
| cache-dependency-path: | | |
| Pipfile.lock | |
| - name: Install pipenv and deps | |
| run: | | |
| python -m pip install --upgrade pipenv wheel | |
| make deps | |
| - name: Lint source code | |
| run: make lint | |
| Unit-Test: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - Lint | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: 'true' | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache: "pipenv" | |
| cache-dependency-path: | | |
| Pipfile.lock | |
| - name: Install pipenv and deps | |
| run: | | |
| python -m pip install --upgrade pipenv wheel | |
| make deps | |
| - name: Install dependencies | |
| run: make deps | |
| - name: Run tests | |
| run: make ci-unit-test | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| flags: main | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| slug: bihealth/auto-acmg | |
| End2End-Test: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - Lint | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: 'true' | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache: "pipenv" | |
| cache-dependency-path: | | |
| Pipfile.lock | |
| - name: Install pipenv and deps | |
| run: | | |
| python -m pip install --upgrade pipenv wheel | |
| make deps | |
| - name: Install dependencies | |
| run: make deps | |
| - name: Run tests | |
| run: make ci-e2e-test | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| flags: e2e | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| slug: bihealth/auto-acmg | |
| Docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: 'true' | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: Install docs dependencies | |
| run: make ci-docs-deps | |
| - name: Build documentation | |
| run: make ci-docs | |
| - name: Upload Sphinx log if build fails | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: sphinx-output-log | |
| path: docs/sphinx-output.log | |