configure setuptools package #83

	name: CI

	on: [push]

	jobs:
	Lint:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4
	with:
	lfs: 'true'

	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	cache: "pipenv"
	cache-dependency-path: \|
	Pipfile.lock

	- name: Install pipenv and deps
	run: \|
	python -m pip install --upgrade pipenv wheel
	make deps

	- name: Lint source code
	run: make lint

	Test:
	runs-on: ubuntu-latest
	needs:
	- Lint
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4
	with:
	lfs: 'true'

	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	cache: "pipenv"
	cache-dependency-path: \|
	Pipfile.lock

	- name: Install pipenv and deps
	run: \|
	python -m pip install --upgrade pipenv wheel
	make deps

	- name: Install dependencies
	run: make deps

	- name: Run tests
	run: make ci-test

	- name: Upload coverage reports to Codecov
	uses: codecov/[email protected]
	with:
	flags: main
	token: ${{ secrets.CODECOV_TOKEN }}
	slug: bihealth/autopvs1

	Docs:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4
	with:
	lfs: 'true'

	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"

	- name: Install docs dependencies
	run: make ci-docs-deps

	- name: Build documentation
	run: make ci-docs

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