tests

.github/workflows/main-ci.yml

@@ -27,43 +27,43 @@ jobs:
       - name: Lint source code
         run: make lint
 
-  # Test:
-  #   runs-on: ubuntu-latest
-  #   needs:
-  #     - Lint
-  #   steps:
-  #     - name: Checkout repository
-  #       uses: actions/checkout@v4
-  #       with:
-  #        lfs: 'true'
+  Test:
+    runs-on: ubuntu-latest
+    needs:
+      - Lint
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+         lfs: 'true'
 
-  #     - name: Set up Python 3.12
-  #       uses: actions/setup-python@v5
-  #       with:
-  #         python-version: "3.12"
-  #         cache: "pipenv"
-  #         cache-dependency-path: |
-  #           Pipfile.lock
+      - name: Set up Python 3.12
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+          cache: "pipenv"
+          cache-dependency-path: |
+            Pipfile.lock
 
-  #     - name: Install pipenv and deps
-  #       run: |
-  #         python -m pip install --upgrade pipenv wheel
-  #         make deps
+      - name: Install pipenv and deps
+        run: |
+          python -m pip install --upgrade pipenv wheel
+          make deps
 
-  #     - name: Install dependencies
-  #       run: make deps
+      - name: Install dependencies
+        run: make deps
 
-  #     - name: Run tests
-  #       run: make test
+      - name: Run tests
+        run: make test
 
-  #     - name: Build docs
-  #       run: make docs
+      # - name: Build docs
+      #   run: make docs
 
-  #     - name: Upload backend coverage reports to Codecov
-  #       uses: codecov/codecov-action@v4
-  #       with:
-  #         flags: backend
-  #         directory: backend
-  #       env:
-  #         CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+      # - name: Upload backend coverage reports to Codecov
+      #   uses: codecov/codecov-action@v4
+      #   with:
+      #     flags: main
+      #     directory: .
+      #   env:
+      #     CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 

Makefile

@@ -1,4 +1,4 @@
-DIRS_PYTHON := src
+DIRS_PYTHON := src tests
 
 .PHONY: help
 help:
@@ -63,28 +63,23 @@ lint-mypy:
 example_run:
 	pipenv run python -m src.main 13-113803407-G-A --genome_release hg19
 
-# .PHONY: test
-# test:
-# 	pipenv run pytest \
-# 		-n auto \
-# 		--cov-report term-missing \
-# 		--cov-report lcov \
-# 		--cov=app \
-# 		tests/
-
-# .PHONY: test-ci
-# test-ci:
-# 	pipenv run pytest \
-# 		--cov-report term-missing \
-# 		--cov-report lcov \
-# 		--cov=app \
-# 		tests/
-
-# .PHONY: ci
-# ci: \
-# 	deps \
-# 	lint \
-# 	test-ci
+.PHONY: test
+test:
+	pipenv run pytest tests/
+
+.PHONY: test-ci
+test-ci:
+	pipenv run pytest \
+		--cov-report term-missing \
+		--cov-report lcov \
+		--cov=src \
+		tests/
+
+.PHONY: ci
+ci: \
+	deps \
+	lint \
+	test-ci
 
 # .PHONY: docs
 # docs:

Pipfile

@@ -13,6 +13,9 @@ pydantic = "*"
 pydantic-settings = "*"
 
 [dev-packages]
+pytest = "*"
+aioresponses = "*"
+pytest-asyncio = "*"
 
 [requires]
 python_version = "3.12"

tests/api/test_dotty.py

@@ -0,0 +1,50 @@
+import pytest
+from aioresponses import aioresponses
+
+from src.api.dotty import DottyClient
+
+
+@pytest.mark.asyncio
+async def test_to_spdi_success():
+    """Test to_spdi method with a successful response."""
+    with aioresponses() as m:
+        mock_response = {"success": True, "value": "mocked response data"}
+        m.get(
+            "https://example.com/dotty/api/v1/to-spdi?q=test_query&assembly=GRCh38",
+            payload=mock_response,
+            status=200,
+        )
+
+        client = DottyClient(api_base_url="https://example.com/dotty")
+        response = await client.to_spdi("test_query", "GRCh38")
+
+        assert response == mock_response
+
+
+@pytest.mark.asyncio
+async def test_to_spdi_failure():
+    """Test to_spdi method with a failed response."""
+    with aioresponses() as m:
+        m.get("https://example.com/dotty/api/v1/to-spdi?q=test_query&assembly=GRCh38", status=404)
+
+        client = DottyClient(api_base_url="https://example.com/dotty")
+        response = await client.to_spdi("test_query", "GRCh38")
+
+        assert response is None
+
+
+@pytest.mark.asyncio
+async def test_to_spdi_grch37_assembly():
+    """Test to_spdi method with default assembly."""
+    with aioresponses() as m:
+        mock_response = {"success": True, "value": "mocked response data"}
+        m.get(
+            "https://example.com/dotty/api/v1/to-spdi?q=test_query&assembly=GRCh37",
+            payload=mock_response,
+            status=200,
+        )
+
+        client = DottyClient(api_base_url="https://example.com/dotty")
+        response = await client.to_spdi("test_query", "GRCh37")
+
+        assert response == mock_response