Fix dump function

bihealth · Sep 24, 2024 · 57470bc · 57470bc
1 parent 8405d8f
commit 57470bc
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Showing 2 changed files with 3 additions and 5 deletions.
diff --git a/Makefile b/Makefile
@@ -132,6 +132,3 @@ jupyterlab:
 dump-openapi:
 	pipenv run python -c 'from src.utils import dump_openapi_yaml; dump_openapi_yaml("openapi.yaml")'
 
-.PHONY: ci-dump-openapi
-ci-dump-openapi:
-	pipenv run python -c 'from src.utils import dump_openapi_yaml; dump_openapi_yaml("tmp/openapi.yaml")'
diff --git a/src/utils.py b/src/utils.py
@@ -4,7 +4,6 @@
 
 import yaml
 from biocommons.seqrepo import SeqRepo
-from fastapi import FastAPI
 from loguru import logger
 
 from lib.maxentpy import maxent
@@ -599,7 +598,9 @@ def _choose_transcript(
             return transcripts_mapping[max_length_transcript]
 
 
-def dump_openapi_yaml(app: FastAPI, path_out: str):
+def dump_openapi_yaml(path_out: str):
     """Dump OpenAPI YAML file"""
+    from src.main import app
+
     with open(path_out, "wt") as f:
         yaml.dump(app.openapi(), f)