Dockerfile

Dockerfile

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+# Use an official Python runtime as a parent image
+FROM python:3.12-slim
+
+# Set the working directory in the container
+WORKDIR /usr/src/app
+
+# Install system dependencies
+RUN apt-get update && apt-get install -y \
+    wget \
+    git \
+    tabix \
+    bgzip \
+    && rm -rf /var/lib/apt/lists/*
+
+# Install pipenv
+RUN pip install pipenv
+
+# Copy the current directory contents into the container at /usr/src/app
+COPY . /usr/src/app
+
+# Install Python dependencies
+RUN pipenv install --deploy --ignore-pipfile
+
+# Set up seqrepo
+RUN mkdir -p /usr/local/share/seqrepo \
+    && chown -R $USER /usr/local/share/seqrepo
+RUN pipenv run seqrepo init -i auto-acmg
+RUN pipenv run seqrepo fetch-load -i auto-acmg -n RefSeq <sequence identifiers>
+
+# Make port 8000 available to the world outside this container
+EXPOSE 8000
+
+# Define environment variable
+ENV NAME World
+
+# Run uvicorn when the container launches
+CMD ["pipenv", "run", "uvicorn", "app.main:app", "--host", "0.0.0.0", "--port", "8000"]