Additional information for kappa values (#155)

* additinal info * additional statisctics * delete unused files
bihealth · Jul 30, 2024 · e86cb52 · e86cb52
1 parent 901d9ae
commit e86cb52
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Showing 10 changed files with 1,971 additions and 171 deletions.
diff --git a/.vscode/launch.json b/.vscode/launch.json
@@ -6,7 +6,7 @@
           "type": "debugpy",
           "request": "launch",
           "module": "src.cli",
-          "args": ["NM_005633.3(SOS1):c.1018C>T", "--genome-release", "grch38"],
+          "args": ["NM_000257.3(MYH7):c.1157A>G", "--genome-release", "grch37"],
           "console": "integratedTerminal"
       },
       {

diff --git a/src/bench/comparison_v3.py b/src/bench/comparison_v3.py
@@ -318,14 +318,14 @@ def eval_genebe(resp, expected):
     except Exception as e:
         print(f"Exception was raised for {var[0]} in Genebe:\n{e}")
 
-    # Skip if both AutoACMG and Intervar did not return any criteria
-    if (
-        record["AutoACMG Criteria"] == ""
-        and record["Intervar Criteria"] == ""
-        and record["Genebe Criteria"] == ""
-    ):
-        print(f"Skipping {var[0]}")
-        continue
+    # # Skip if both AutoACMG and Intervar did not return any criteria
+    # if (
+    #     record["AutoACMG Criteria"] == ""
+    #     and record["Intervar Criteria"] == ""
+    #     and record["Genebe Criteria"] == ""
+    # ):
+    #     print(f"Skipping {var[0]}")
+    #     continue
 
     # Add the record to the stats
     print(f"Record for {var[0]}: {record}")

diff --git a/src/bench/correlation_matrix.csv b/src/bench/correlation_matrix.csv