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Implement BA1, BS1, BS2, PS4, PM2 criteria #106

Merged
merged 5 commits into from
May 27, 2024
Merged

Implement BA1, BS1, BS2, PS4, PM2 criteria #106

merged 5 commits into from
May 27, 2024

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gromdimon
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@gromdimon gromdimon commented May 23, 2024 •
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Issue:

Description:

  • Implemented these criteria

@gromdimon gromdimon linked an issue May 23, 2024 that may be closed by this pull request
Implement BA1, BS1, BS2, PS4, and PM2 criteria #71
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@gromdimon gromdimon force-pushed the 71-implement-ba1-bs1-bs2-ps4-and-pm2-criteria branch from 9e7adb9 to 270c628 Compare May 23, 2024 14:26
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codecov bot commented May 23, 2024 •
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Codecov Report

Attention: Patch coverage is 54.78261% with 52 lines in your changes are missing coverage. Please review.

Project coverage is 79.37%. Comparing base (8f47260) to head (13ab9f4).

Additional details and impacted files 
@@            Coverage Diff             @@
##             main     #106      +/-   ##
==========================================
- Coverage   81.24%   79.37%   -1.88%     
==========================================
  Files          20       21       +1     
  Lines        1578     1687     +109     
==========================================
+ Hits         1282     1339      +57     
- Misses        296      348      +52
Files Coverage Δ
src/api/annonars.py 85.00% <100.00%> (ø)
src/defs/annonars_variant.py 100.00% <100.00%> (ø)
src/defs/auto_acmg.py 97.91% <100.00%> (+0.29%) ⬆️
src/auto_ps1_pm5.py 65.27% <85.71%> (+0.57%) ⬆️
src/auto_acmg.py 70.47% <63.63%> (-0.81%) ⬇️
src/atuo_ba1_bs1_bs_2_pm2.py 45.34% <45.34%> (ø)

@gromdimon gromdimon force-pushed the 71-implement-ba1-bs1-bs2-ps4-and-pm2-criteria branch from 2f6e217 to 6e10702 Compare May 27, 2024 13:49
@gromdimon gromdimon merged commit 62630c7 into main May 27, 2024
4 of 5 checks passed
@gromdimon gromdimon deleted the 71-implement-ba1-bs1-bs2-ps4-and-pm2-criteria branch May 27, 2024 13:56
gromdimon added a commit that referenced this pull request Aug 2, 2024
@gromdimon
Implement BA1, BS1, BS2, PS4, PM2 criteria (#106)
3cca8d4 
* wip

* initial changes

* wip

* example implementation of ba1, bs1, bs2, etc

* add config parameter for acmg tests
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Implement BA1, BS1, BS2, PS4, and PM2 criteria
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@gromdimon