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Reimplement AutoPS1PM5 #130

Merged
merged 9 commits into from
Jun 13, 2024
Merged

Reimplement AutoPS1PM5 #130

merged 9 commits into from
Jun 13, 2024

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gromdimon
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@gromdimon gromdimon linked an issue Jun 13, 2024 that may be closed by this pull request
Reimplement AutoPS1PM5 #123
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codecov bot commented Jun 13, 2024 •
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Codecov Report

Attention: Patch coverage is 40.90909% with 39 lines in your changes missing coverage. Please review.

Project coverage is 63.00%. Comparing base (0906b77) to head (8d74f35).

Additional details and impacted files 
@@            Coverage Diff             @@
##             main     #130      +/-   ##
==========================================
+ Coverage   60.29%   63.00%   +2.71%     
==========================================
  Files          28       28              
  Lines        2637     2633       -4     
==========================================
+ Hits         1590     1659      +69     
+ Misses       1047      974      -73
Files Coverage Δ
src/api/annonars.py 85.36% <100.00%> (+0.36%) ⬆️
src/auto_acmg.py 84.44% <100.00%> (ø)
src/criteria/auto_bp7.py 32.29% <100.00%> (+11.67%) ⬆️
src/criteria/auto_pp3_bp4.py 66.66% <100.00%> (+50.96%) ⬆️
src/defs/annonars_variant.py 100.00% <ø> (ø)
src/pvs1/auto_pvs1.py 79.41% <100.00%> (-0.59%) ⬇️
src/pvs1/seqvar_pvs1.py 51.11% <100.00%> (ø)
src/pvs1/strucvar_pvs1.py 33.00% <0.00%> (ø)
src/criteria/auto_ba1_bs1_bs2_pm2.py 23.52% <0.00%> (+0.27%) ⬆️
src/criteria/auto_pm1.py 21.05% <0.00%> (+0.27%) ⬆️
... and 4 more

@gromdimon gromdimon merged commit b6fdafa into main Jun 13, 2024
5 checks passed
@gromdimon gromdimon deleted the 123-reimplement-autops1pm5 branch June 13, 2024 18:10
gromdimon added a commit that referenced this pull request Aug 2, 2024
@gromdimon
Reimplement AutoPS1PM5 (#130)
dc29010 
* update dependencies

* add integration tests

* integration tests

* add integration tests for PS1 PM5

* wip

* add tests

* rename assets

* add missense check for PS1/PM5

* minor
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Reimplement AutoPS1PM5
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@gromdimon