Increase test coverage

[gromdimon]

Issue:

• Closes Increase test coverage #134

Description:

• Rewrote unit tests
• Fixed integration tests
• Implemented new e2e tests

[codecov]

Codecov Report

Attention: Patch coverage is 95.62044% with 6 lines in your changes missing coverage. Please review.

Project coverage is 82.72%. Comparing base (58111a5) to head (c22fec7).
Report is 1 commits behind head on main.

Files	Patch %	Lines
src/criteria/auto_pvs1.py	70.00%	3 Missing ⚠️
src/utils.py	0.00%	2 Missing ⚠️
src/criteria/auto_pm1.py	87.50%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##             main     #162       +/-   ##
===========================================
+ Coverage   44.66%   82.72%   +38.05%     
===========================================
  Files          33       27        -6     
  Lines        3132     2611      -521     
===========================================
+ Hits         1399     2160      +761     
+ Misses       1733      451     -1282     

Files	Coverage Δ
src/auto_acmg.py	58.64% <100.00%> (+30.61%)	⬆️
src/criteria/auto_pm4_bp3.py	98.83% <100.00%> (+73.25%)	⬆️
src/defs/auto_acmg.py	99.57% <100.00%> (+2.13%)	⬆️
src/defs/auto_pvs1.py	100.00% <100.00%> (ø)
src/defs/core.py	82.35% <100.00%> (+3.78%)	⬆️
src/defs/genome_builds.py	100.00% <100.00%> (ø)
src/defs/seqvar.py	95.91% <100.00%> (+5.29%)	⬆️
src/criteria/auto_pm1.py	83.33% <87.50%> (+60.16%)	⬆️
src/utils.py	76.55% <0.00%> (+35.22%)	⬆️
src/criteria/auto_pvs1.py	62.61% <70.00%> (+52.33%)	⬆️

... and 15 files with indirect coverage changes

[gromdimon]

The test coverage increased.
Done:

• Fixed old unit tests
• New unit tests
• E2e tests
• Integration tests