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Implement pm1 vcep rules #171

Merged
merged 8 commits into from
Aug 24, 2024
Merged

Implement pm1 vcep rules #171

merged 8 commits into from
Aug 24, 2024

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gromdimon
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Issue:

Description:

  • Implemented PM1 rules for specific VCEPs.

@gromdimon gromdimon linked an issue Aug 23, 2024 that may be closed by this pull request
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codecov bot commented Aug 23, 2024

Codecov Report

Attention: Patch coverage is 98.35165% with 9 lines in your changes missing coverage. Please review.

Please upload report for BASE (main@059ada5). Learn more about missing BASE report.
Report is 1 commits behind head on main.

Files Patch % Lines
src/vcep/scid.py 83.87% 5 Missing ⚠️
src/defs/core.py 33.33% 2 Missing ⚠️
src/auto_acmg.py 66.66% 1 Missing ⚠️
src/vcep/pulmonary_hypertension.py 95.23% 1 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main     #171   +/-   ##
=======================================
  Coverage        ?   85.97%           
=======================================
  Files           ?       63           
  Lines           ?     3294           
  Branches        ?        0           
=======================================
  Hits            ?     2832           
  Misses          ?      462           
  Partials        ?        0           
Files Coverage Δ
src/cli.py 96.00% <100.00%> (ø)
src/criteria/auto_pm1.py 87.25% <100.00%> (ø)
src/defs/auto_acmg.py 99.57% <100.00%> (ø)
src/vcep/__init__.py 100.00% <100.00%> (ø)
src/vcep/acadvl.py 100.00% <100.00%> (ø)
src/vcep/cardiomyopathy.py 100.00% <ø> (ø)
src/vcep/coagulation_factor_deficiency.py 96.96% <100.00%> (ø)
src/vcep/congenital_myopathies.py 100.00% <100.00%> (ø)
src/vcep/dicer1.py 100.00% <100.00%> (ø)
src/vcep/enigma.py 100.00% <100.00%> (ø)
... and 27 more

@gromdimon gromdimon merged commit f8a6a56 into main Aug 24, 2024
5 checks passed
@gromdimon gromdimon deleted the 170-implement-pm1-vcep-rules branch August 24, 2024 16:01
@gromdimon gromdimon mentioned this pull request Aug 25, 2024
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Implement PM1 VCEP rules
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