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Implemente undergo_nmd method #190

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merged 2 commits into from
Sep 4, 2024

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Issue:

Description:

  • Implemented method
  • Added additional check for deletions (at least affect one full exon)
  • Added Unit tests

@gromdimon gromdimon linked an issue Sep 4, 2024 that may be closed by this pull request
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codecov bot commented Sep 4, 2024

Codecov Report

Attention: Patch coverage is 80.00000% with 7 lines in your changes missing coverage. Please review.

Project coverage is 84.00%. Comparing base (fdcaa9a) to head (ef0e0a3).
Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
src/strucvar/auto_pvs1.py 80.00% 7 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #190      +/-   ##
==========================================
- Coverage   84.35%   84.00%   -0.35%     
==========================================
  Files          65       65              
  Lines        4678     4708      +30     
==========================================
+ Hits         3946     3955       +9     
- Misses        732      753      +21     
Files with missing lines Coverage Δ
src/seqvar/auto_pvs1.py 62.76% <ø> (ø)
src/strucvar/auto_pvs1.py 55.35% <80.00%> (-5.52%) ⬇️

@gromdimon gromdimon merged commit 1559e6c into main Sep 4, 2024
4 checks passed
@gromdimon gromdimon deleted the 47-implement-_undergo_nmd-method-for-strucvars branch September 4, 2024 10:13
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Implement _undergo_nmd method for StrucVars
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