Implement duplication - tandem setting to temporary fix the PVS1 criteria for duplication CNVs

[gromdimon]

Issue:

• Temorary closes Implement _proven_in_tandem method #52 Implement _presumed_in_tandem method #53 Implement _duplication_disrupts_rf method #54

Description:

• Just implement additional setting and comment real decision tree for duplication for PVS1.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 86.68%. Comparing base (1500123) to head (55f3c4d).
Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #205   +/-   ##
=======================================
  Coverage   86.67%   86.68%           
=======================================
  Files          65       65           
  Lines        5627     5631    +4     
=======================================
+ Hits         4877     4881    +4     
  Misses        750      750           

Files with missing lines	Coverage Δ
src/auto_acmg.py	61.41% <100.00%> (ø)
src/cli.py	96.29% <100.00%> (+0.29%)	⬆️
src/core/config.py	100.00% <100.00%> (ø)
src/strucvar/auto_pvs1.py	95.02% <100.00%> (+0.02%)	⬆️