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Add misZ score evaluation for PP2 and BP1 #207

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merged 2 commits into from
Sep 10, 2024

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Issue:

Description:

  • Implement
  • Test
  • Document

@gromdimon gromdimon linked an issue Sep 10, 2024 that may be closed by this pull request
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codecov bot commented Sep 10, 2024

Codecov Report

Attention: Patch coverage is 71.42857% with 6 lines in your changes missing coverage. Please review.

Project coverage is 86.87%. Comparing base (e1b0594) to head (1803b0a).
Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
src/seqvar/auto_pp2_bp1.py 71.42% 6 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #207      +/-   ##
==========================================
+ Coverage   86.68%   86.87%   +0.19%     
==========================================
  Files          65       65              
  Lines        5631     5640       +9     
==========================================
+ Hits         4881     4900      +19     
+ Misses        750      740      -10     
Files with missing lines Coverage Δ
src/defs/auto_acmg.py 99.64% <ø> (ø)
src/seqvar/auto_pp2_bp1.py 83.75% <71.42%> (+16.14%) ⬆️

@gromdimon gromdimon merged commit 1058909 into main Sep 10, 2024
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@gromdimon gromdimon deleted the 183-reimplement-pp2-to-use-missense-z-score branch September 10, 2024 11:16
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Reimplement PP2 to use missense z score
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