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Rename Notmet and Met prediction statuses #208

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gromdimon
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Description:

  • Rename
  • Fix tests
  • Migrate to ruff formatting and linting

@gromdimon gromdimon linked an issue Sep 10, 2024 that may be closed by this pull request
@gromdimon gromdimon merged commit 30d9b46 into main Sep 10, 2024
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@gromdimon gromdimon deleted the 194-deprikate-not-applicable-status-of-the-criteria-prediction branch September 10, 2024 11:54
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codecov bot commented Sep 10, 2024

Codecov Report

Attention: Patch coverage is 78.26087% with 5 lines in your changes missing coverage. Please review.

Project coverage is 86.78%. Comparing base (1058909) to head (833a7bb).
Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
src/seqvar/auto_pm2_ba1_bs1_bs2.py 25.00% 3 Missing ⚠️
src/auto_acmg.py 50.00% 1 Missing ⚠️
src/utils.py 50.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #208      +/-   ##
==========================================
- Coverage   86.87%   86.78%   -0.10%     
==========================================
  Files          65       65              
  Lines        5640     5624      -16     
==========================================
- Hits         4900     4881      -19     
- Misses        740      743       +3     
Files with missing lines Coverage Δ
src/api/annonars.py 75.72% <100.00%> (ø)
src/cli.py 96.29% <100.00%> (ø)
src/defs/auto_acmg.py 99.63% <100.00%> (-0.01%) ⬇️
src/defs/genome_builds.py 100.00% <ø> (ø)
src/defs/seqvar.py 95.09% <ø> (ø)
src/seqvar/auto_bp7.py 97.40% <ø> (ø)
src/seqvar/auto_pm1.py 87.87% <ø> (ø)
src/seqvar/auto_pm4_bp3.py 97.80% <100.00%> (ø)
src/seqvar/auto_pp2_bp1.py 83.75% <100.00%> (ø)
src/seqvar/auto_pp3_bp4.py 94.91% <ø> (ø)
... and 43 more

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Deprikate "Not applicable" status of the criteria prediction
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