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Provide an API for AutoACMG #216

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merged 6 commits into from
Sep 13, 2024

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Description:
Added API

@gromdimon gromdimon linked an issue Sep 12, 2024 that may be closed by this pull request
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codecov bot commented Sep 12, 2024

Codecov Report

Attention: Patch coverage is 95.38462% with 6 lines in your changes missing coverage. Please review.

Project coverage is 89.00%. Comparing base (645e8e3) to head (06dd75d).
Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
src/api/internal/api.py 91.83% 4 Missing ⚠️
src/cli.py 50.00% 1 Missing ⚠️
src/main.py 90.90% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #216      +/-   ##
==========================================
+ Coverage   88.17%   89.00%   +0.82%     
==========================================
  Files          65       68       +3     
  Lines        5617     5713      +96     
==========================================
+ Hits         4953     5085     +132     
+ Misses        664      628      -36     
Files with missing lines Coverage Δ
src/api/reev/annonars.py 75.72% <ø> (ø)
src/api/reev/dotty.py 72.50% <ø> (ø)
src/api/reev/mehari.py 75.29% <ø> (ø)
src/auto_acmg.py 76.57% <100.00%> (+16.91%) ⬆️
src/core/config.py 100.00% <100.00%> (ø)
src/defs/api.py 100.00% <100.00%> (ø)
src/defs/seqvar.py 95.09% <100.00%> (ø)
src/seqvar/default_predictor.py 100.00% <100.00%> (ø)
src/strucvar/default_predictor.py 100.00% <100.00%> (ø)
src/utils.py 79.44% <100.00%> (+1.22%) ⬆️
... and 3 more

... and 3 files with indirect coverage changes

@gromdimon gromdimon merged commit 7268ac1 into main Sep 13, 2024
5 checks passed
@gromdimon gromdimon deleted the 204-provide-an-api-for-variant-classification branch September 13, 2024 09:07
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Provide an API for variant classification
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