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Fix broken checkout behavior introduced by PR ESCOMP#172.
Finding locally installed optional components was broken both because it did not correctly inspect the status of those components, and because it added components-to-checkout by path instead of by name. Printing status updates also a bit wonky because 'print_progress' was not correctly passed down. Slight update to testing docs: no need to run python 2 and 3 separately, and system tests now exist.
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