Merge pull request #201 from bio-phys/fix-download-vulnerability-v2 #68
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| name: tests | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - master | |
| pull_request: | |
| branches: | |
| - develop | |
| - master | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8"] | |
| env: | |
| PYTHON: ${{ matrix.python-version }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install poetry | |
| run: pip install poetry | |
| - name: Install mdbenchmark | |
| run: poetry install --extras docs | |
| - name: Check reformat | |
| run: poetry run make reformat-check | |
| - name: Check style | |
| run: poetry run make flake8 | |
| - name: Check sort | |
| run: poetry run make isort-check | |
| - name: Check reStructuredText | |
| run: poetry run make rst-lint | |
| - name: Unit-tests | |
| run: poetry run pytest -v --cov=mdbenchmark --cov-report=xml | |
| - name: Upload coverage | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| env_vars: PYTHON | |
| fail_ci_if_error: true | |
| - name: Build distribution | |
| run: poetry build | |
| - name: Upload build artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: dists.${{ matrix.python-version }} | |
| path: dist/ | |
| - name: Make docs | |
| run: | | |
| cd docs | |
| poetry run make build | |
| test-build: | |
| runs-on: ubuntu-latest | |
| needs: test | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8"] | |
| steps: | |
| - name: Enable pip-caching | |
| run: touch requirements.txt | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' #doesn't seem to work | |
| - name: Update pip | |
| run: pip install --upgrade pip | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: dists.${{ matrix.python-version }} | |
| path: dist | |
| - name: Install mdbenchmark | |
| run: pip install dist/*.tar.gz | |
| - name: Check run | |
| run: mdbenchmark | |