update dev #94
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update dev #94
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Add scripts to generate CHANGELOG.md
Remove IEEE_Docs and update to scripts/log.sh
Deleted IEEE files and updated the scripts files for change log creation
Add docs/release_protocol.md
Fix small typo
Removed the schemas folder and replaced with a clone of the IEEE standard.
The registry has three character prefixes reserved. We can also reserve GW if you want to?
`https://opensource.ieee.org/2791-object/ieee-2791-schema/-/releases/version-1.4` Changes to be committed: modified: ieee-2791-schema/2791object.json modified: ieee-2791-schema/AUTHORS modified: ieee-2791-schema/CONTRIBUTORS modified: ieee-2791-schema/LICENSE modified: ieee-2791-schema/README.md modified: ieee-2791-schema/description_domain.json modified: ieee-2791-schema/error_domain.json modified: ieee-2791-schema/execution_domain.json modified: ieee-2791-schema/io_domain.json modified: ieee-2791-schema/parametric_domain.json modified: ieee-2791-schema/provenance_domain.json modified: ieee-2791-schema/usability_domain.json
# Changes to be committed: # new file: Best_Practices # new file: VERSION.py # modified: docs/io-domain.md # modified: docs/provenance-domain.md # modified: examples/HCV1a.json # modified: examples/HIVE_metagenomics.json # modified: examples/glycosylation-sites-UniCarbKB.json # modified: scripts/validate.py
Changes to be committed: new file: archetypes/default.md new file: config.toml modified: scripts/log.sh
Changes to be committed: deleted: Best_Practices modified: README.md deleted: archetypes/default.md renamed: docs/CHANGELOG.md -> content/CHANGELOG.md new file: content/_index.md renamed: docs/bco-domains.md -> content/bco-domains.md renamed: docs/best_practices.md -> content/best_practices.md renamed: docs/description-domain.md -> content/description-domain.md renamed: docs/error-domain.md -> content/error-domain.md renamed: docs/execution-domain.md -> content/execution-domain.md renamed: docs/extension-fhir.md -> content/extension-fhir.md renamed: docs/extension-scm.md -> content/extension-scm.md renamed: docs/external-references.md -> content/external-references.md renamed: docs/introduction.md -> content/introduction.md renamed: docs/io-domain.md -> content/io-domain.md renamed: docs/parametric-domain.md -> content/parametric-domain.md renamed: docs/provenance-domain.md -> content/provenance-domain.md renamed: docs/release_protocol.md -> content/release_protocol.md renamed: docs/top-level.md -> content/top-level.md renamed: docs/usability-domain.md -> content/usability-domain.md renamed: docs/user_guide.md -> content/user_guide.md new file: themes/hugo-biocompute/README.md new file: themes/hugo-biocompute/archetypes/default.md new file: themes/hugo-biocompute/layouts/404.html new file: themes/hugo-biocompute/layouts/_default/baseof.html new file: themes/hugo-biocompute/layouts/_default/list.html new file: themes/hugo-biocompute/layouts/_default/section.html new file: themes/hugo-biocompute/layouts/_default/single.html new file: themes/hugo-biocompute/layouts/_default/taxonomy.html new file: themes/hugo-biocompute/layouts/index.html new file: themes/hugo-biocompute/layouts/partials/content.html new file: themes/hugo-biocompute/layouts/partials/disqus.html new file: themes/hugo-biocompute/layouts/partials/footer.html new file: themes/hugo-biocompute/layouts/partials/footer_mathjax.html new file: themes/hugo-biocompute/layouts/partials/gtm.html new file: themes/hugo-biocompute/layouts/partials/header.html new file: themes/hugo-biocompute/layouts/partials/list.html new file: themes/hugo-biocompute/layouts/partials/utterances.html new file: themes/hugo-biocompute/static/css/custom.css new file: themes/hugo-biocompute/static/js/math-code.js new file: themes/hugo-biocompute/theme.toml
Changes to be committed: new file: netlify.toml
Changes to be committed: modified: config.toml modified: content/_index.md modified: content/user_guide.md new file: static/images/logo.about.png new file: static/images/logo.helix_only.png
Changes to be committed: modified: config.toml deleted: content/CHANGELOG.md modified: content/_index.md modified: content/bco-domains.md modified: content/best_practices.md modified: content/description-domain.md modified: content/error-domain.md renamed: examples/HCV1a.json -> content/examples/HCV1a.json renamed: examples/HIVE_metagenomics.json -> content/examples/HIVE_metagenomics.json renamed: examples/LICENSE -> content/examples/LICENSE renamed: examples/README.md -> content/examples/README.md renamed: examples/UVP.json -> content/examples/UVP.json renamed: examples/glycosylation-sites-UniCarbKB.json -> content/examples/glycosylation-sites-UniCarbKB.json modified: content/execution-domain.md modified: content/extension-fhir.md modified: content/extension-scm.md modified: content/external-references.md modified: content/introduction.md modified: content/io-domain.md modified: content/parametric-domain.md modified: content/provenance-domain.md new file: content/sop.md modified: content/top-level.md modified: content/usability-domain.md modified: content/user_guide.md new file: static/_redirects new file: static/images/certification_requirements.png modified: themes/hugo-biocompute/static/css/custom.css
Changes to be committed: new file: static/images/favicon.png
- check extension formats - update etags Changes to be committed: modified: HCV1a.json modified: HIVE_metagenomics.json modified: UVP.json modified: glycosylation-sites-UniCarbKB.json
Changes to be committed: modified: config.toml new file: content/about.md new file: content/events.md modified: content/extension-scm.md new file: content/news.md new file: public/404.html new file: public/_redirects new file: public/bco-domains/index.html new file: public/best_practices/index.html new file: public/categories/index.html new file: public/categories/index.xml new file: public/css/custom.css new file: public/description-domain/index.html new file: public/error-domain/index.html new file: public/examples/HCV1a.json new file: public/examples/HIVE_metagenomics.json new file: public/examples/LICENSE new file: public/examples/UVP.json new file: public/examples/glycosylation-sites-UniCarbKB.json new file: public/examples/index.html new file: public/examples/index.xml new file: public/examples/readme/index.html new file: public/execution-domain/index.html new file: public/extension-fhir/index.html new file: public/extension-scm/index.html new file: public/external-references/index.html new file: public/images/certification_requirements.png new file: public/images/favicon.png new file: public/images/logo.about.png new file: public/images/logo.helix_only.png new file: public/index.html new file: public/index.xml new file: public/introduction/index.html new file: public/io-domain/index.html new file: public/js/math-code.js new file: public/parametric-domain/index.html new file: public/provenance-domain/index.html new file: public/release_protocol/index.html new file: public/sitemap.xml new file: public/sop/index.html new file: public/tags/index.html new file: public/tags/index.xml new file: public/top-level/index.html new file: public/usability-domain/index.html new file: public/user_guide/index.html new file: static/docs/BCOCheatSheet.pdf new file: static/docs/ReviewerWorkshop_24June2020_Deck.pdf new file: static/images/Almeida.jpg new file: static/images/Alterovitz.png new file: static/images/Crusoe.jpg new file: static/images/Dean.png new file: static/images/Goble.png new file: static/images/Goecks.png new file: static/images/Golikov.jpg new file: static/images/Karagiannis.jpg new file: static/images/Keeney.png new file: static/images/King.png new file: static/images/Krampis.jpg new file: static/images/Mazumder.png new file: static/images/Patel.jpg new file: static/images/Simonyan.png new file: static/images/Soiland-Reyes.jpg new file: static/images/Soranzo.jpg new file: static/images/Taylor.jpg new file: static/images/Thompson.jpg new file: static/images/Travis.jpg new file: static/images/about.2.png new file: static/images/about.3.png new file: static/images/about.4.png new file: static/images/about.8.png new file: static/images/clinical.1.png new file: static/images/landing.1.png new file: static/images/landing.2-original.png new file: static/images/landing.2.png new file: static/images/landing.4-original.png new file: static/images/landing.4.png new file: static/images/landing.5.png new file: static/images/logo.Argentys.png new file: static/images/logo.Embleema.png new file: static/images/logo.MilliporeSigma.png new file: static/images/logo.OpenHealthSystemsLaboratory.png new file: static/images/logo.clinical.png new file: static/images/logo.regulatory.png new file: static/images/logo.research.png new file: static/images/logo.workshop.png new file: static/images/organization.2.png new file: static/images/powered-by-aws.png new file: static/images/ppp.png new file: static/images/services.1.png new file: static/images/services.2.png new file: static/images/services.3.png new file: static/images/services.4.png
Refactoring for Portal linking
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