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Add API for LDH #347

Merged
merged 2 commits into from
Aug 30, 2024
Merged

Add API for LDH #347

merged 2 commits into from
Aug 30, 2024

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HadleyKing
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#333 Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/selectors.py
modified: biocompute/services.py
modified: biocompute/urls.py

HadleyKing and others added 2 commits August 29, 2024 10:59
#333
Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/selectors.py
	modified:   biocompute/services.py
	modified:   biocompute/urls.py
@HadleyKing HadleyKing merged commit 79239e4 into dev Aug 30, 2024
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@HadleyKing HadleyKing deleted the ldh branch August 30, 2024 14:11
HadleyKing added a commit that referenced this pull request Aug 30, 2024
* BCO scoring changes

* Add New Production Deployment md

Changes to be committed:
	deleted:    docs/bco_scores.json
	modified:   docs/deployment/productionDeployment.md
	new file:   docs/newProductionInstance.md

* Update config.md

* Add API endpoint for basic comaprison

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/urls.py
	modified:   requirements.txt

* Fix Django CI issue (#340)

biocompute-objects/portal_userdb#380

Changes to be committed:
	modified:   .github/workflows/django.yml
	modified:   biocompute/apis.py
	modified:   biocompute/models.py
	modified:   config/settings.py
	modified:   config/urls.py

* Update to BcoValidator.load_schema (#341)

Updated the function to check locally for the most used schemas. Improves
testing and speed in BCO validation.

Changes to be committed:
	modified:   biocompute/services.py
	renamed:    config/IEEE/2791object.json -> config/schemas/2791object.json
	new file:   config/schemas/dataset_extension.json
	renamed:    config/IEEE/description_domain.json -> config/schemas/description_domain.json
	renamed:    config/IEEE/error_domain.json -> config/schemas/error_domain.json
	renamed:    config/IEEE/execution_domain.json -> config/schemas/execution_domain.json
	new file:   config/schemas/fhir_extension.json
	new file:   config/schemas/galaxy_extension.json
	renamed:    config/IEEE/io_domain.json -> config/schemas/io_domain.json
	new file:   config/schemas/license_extension.json
	renamed:    config/IEEE/parametric_domain.json -> config/schemas/parametric_domain.json
	renamed:    config/IEEE/provenance_domain.json -> config/schemas/provenance_domain.json
	new file:   config/schemas/scm_extension.json
	renamed:    config/IEEE/usability_domain.json -> config/schemas/usability_domain.json

* Add additional schema files and reorganize

Changes to be committed:
	modified:   biocompute/services.py
	new file:   config/schemas/1.1.0/dataset_extension.json
	new file:   config/schemas/1.1.0/fhir_extension.json
	new file:   config/schemas/1.1.0/galaxy_extension.json
	new file:   config/schemas/1.1.0/license_extension.json
	new file:   config/schemas/1.1.0/scm_extension.json
	renamed:    config/schemas/dataset_extension.json -> config/schemas/1.2.0/dataset_extension.json
	renamed:    config/schemas/fhir_extension.json -> config/schemas/1.2.0/fhir_extension.json
	renamed:    config/schemas/galaxy_extension.json -> config/schemas/1.2.0/galaxy_extension.json
	renamed:    config/schemas/license_extension.json -> config/schemas/1.2.0/license_extension.json
	renamed:    config/schemas/scm_extension.json -> config/schemas/1.2.0/scm_extension.json
	renamed:    config/schemas/2791object.json -> config/schemas/2791/2791object.json
	renamed:    config/schemas/description_domain.json -> config/schemas/2791/description_domain.json
	renamed:    config/schemas/error_domain.json -> config/schemas/2791/error_domain.json
	renamed:    config/schemas/execution_domain.json -> config/schemas/2791/execution_domain.json
	renamed:    config/schemas/io_domain.json -> config/schemas/2791/io_domain.json
	renamed:    config/schemas/parametric_domain.json -> config/schemas/2791/parametric_domain.json
	renamed:    config/schemas/provenance_domain.json -> config/schemas/2791/provenance_domain.json
	renamed:    config/schemas/usability_domain.json -> config/schemas/2791/usability_domain.json
	modified:   config/settings.py
	modified:   requirements.txt

* Add instructions for Docker deployment

Changes to be committed:
	modified:   Dockerfile
	modified:   docker-compose.yml
	modified:   docs/deployment/dockerDeployment.md
	new file:   entrypoint.sh

* Update comparison API (#344)

Changes to be committed:
	modified:   biocompute/apis.py

* Add API for LDH (#347)

#333
Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/selectors.py
	modified:   biocompute/services.py
	modified:   biocompute/urls.py

---------

Co-authored-by: Kiran Sen <[email protected]>
Co-authored-by: Kiran Sen <[email protected]>
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