Update sizemeup to 1.1.0

[BiocondaBot]

Update sizemeup: 1.0.2 → 1.1.0

Info	Link or Description
Recipe	recipes/sizemeup (click to view/edit other files)
Summary	A simple tool to determine the genome size of an organism
Home	https://github.com/rpetit3/sizemeup
Releases	https://github.com/rpetit3/sizemeup/tags
Recipe Maintainer(s)	@rpetit3
Author	@rpetit3

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This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

📝 Walkthrough

Walkthrough

The pull request updates the sizemeup package's version from 1.0.2 to 1.1.0 in the meta.yaml file. Along with the version change, the SHA256 checksum for the source tarball has been updated to match the new version. The test commands have also been modified, with one command replaced and a new command added. No other sections of the meta.yaml file, including package metadata, source URL, build configuration, requirements, and about information, have been modified.

Changes

File	Change Summary
recipes/sizemeup/meta.yaml	- Version updated from 1.0.2 to 1.1.0 - SHA256 checksum updated from 0290d945909e20ccd417e4a874c22e14f5904695586974a98424dd9890bc9550 to 3941e0b6affa2ba69c6ee01875d38ed8a94b864fbf51c4971a811d5483a61b8c - Test command updated from sizemeup --species "Staphylococcus aureus" to sizemeup --query "Staphylococcus aureus" - New test command sizemeup -q 1280 added

Possibly related PRs

• Update bactopia-teton to 1.0.5 #51037: This PR updates the bactopia-teton package to version 1.0.5 and adds a new requirement for sizemeup >=1.0.2, directly linking it to the main PR which updates the sizemeup package version.

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 6aafe97 and fd2fdbf.

📒 Files selected for processing (1)

• recipes/sizemeup/meta.yaml (1 hunks)

🧰 Additional context used

🪛 yamllint

recipes/sizemeup/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (3)

recipes/sizemeup/meta.yaml (3)

2-2: Version update looks good.

The version has been correctly updated from 1.0.2 to 1.1.0, which aligns with the PR objectives.

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35-36: Test commands have been updated to reflect new functionality.

The changes in the test commands indicate updates to the CLI interface and expanded functionality:

1. --species has been replaced with --query, suggesting a more flexible input system.
2. A new test with a numeric query (1280) has been added, indicating support for different types of inputs.

These updates align well with the version bump from 1.0.2 to 1.1.0.

To ensure these changes are properly documented, please run the following script:

#!/bin/bash
# Description: Check if the README or documentation has been updated to reflect the CLI changes

# Search for updated CLI documentation
rg -i "usage|--query|-q" README.md docs

Also, verify that the sizemeup --help output includes these new options:

sizemeup --help | rg -i "query|species"

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10-10: SHA256 checksum has been updated.

The SHA256 checksum has been changed, which is expected with a new version. However, it's important to verify that this checksum corresponds to the correct source tarball for version 1.1.0.

To verify the checksum, you can run the following script:

---

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