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43 Open 72 Closed
43 Open 72 Closed
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Issues list

Input fastq file enhancement
#120 opened Oct 20, 2023 by CaroB-M
Specify the --cpu 4 but only 1 cpu was utilized bug
#118 opened Aug 15, 2023 by zuopengl
Use Minimap2 for scaffolding instead of SortMeRNA enhancement
#116 opened May 11, 2023 by ppericard v1.7.0
@ppericard
Add Changelog following current standards enhancement
#115 opened May 11, 2023 by ppericard v1.6.2
@ppericard
Repatriate ComponentSearch in MATAM repo enhancement
#114 opened May 11, 2023 by ppericard v1.6.2
@ppericard
core-sga files
#110 opened Mar 10, 2023 by joao1980
can you please help me solve this issue
#109 opened Aug 13, 2022 by triplem90manas
Get single marker gene from read
#108 opened May 19, 2022 by Lcornet
matam_db_preprocessing.py clustering
#107 opened May 18, 2022 by mdsufz
How to improve final alignement
#106 opened Jan 25, 2022 by MonicaSteffi
Error in get the default SSU rRNA reference database bug
#105 opened Dec 29, 2021 by duu-123
Output files clarification
#104 opened Sep 6, 2021 by NataliHB
fastq format foward only or interleaved fastq? question
#103 opened Jun 9, 2021 by jianshu93
@loic-couderc
1
Reduce memory usage of scaffolding step - Limit size of SAM file from aligning contigs against complete ref db enhancement
#97 opened Nov 4, 2019 by ppericard
3 tasks
v2.0.0
Our bioconda recipe does not use the build.py script enhancement
#95 opened Oct 16, 2019 by loic-couderc
1
Better error message when the input file does not exist enhancement
#94 opened Oct 16, 2019 by loic-couderc
1
Read alignment SAM file is not sorted correctly prior to score filtering bug
#88 opened Jul 30, 2019 by ppericard
Replace SortMeRNA by Minimap2 for contig mapping onto the complete ref database enhancement
#87 opened Jul 28, 2019 by ppericard Backlog
MATAM on conda uses biocore/sortmerna instead of ppericard/sortmerna which makes it slower conda need follow-up question
#85 opened Jul 22, 2019 by ppericard
3
Add GitHub Pages for the project enhancement
#78 opened May 29, 2019 by ppericard
Add filter for very low support scaffolds (count < 1) enhancement
#76 opened May 22, 2019 by ppericard
No option --perform_taxonomic_assignment user-error
#73 opened May 6, 2019 by ciemanek
4
Homogenize database option usage (-d) when creating and using a MATAM db enhancement
#70 opened Feb 11, 2019 by ppericard
Error in matam_assembly on Docker when running example file user-error
#63 opened Jul 11, 2018 by rachelleLim
@loic-couderc
5
Update krona visualization to take into account RDP confidence scores enhancement
#54 opened Oct 31, 2017 by loic-couderc Backlog
1
ProTip! Adding no:label will show everything without a label.