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brentp committed Jan 31, 2022
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Expand Up @@ -43,9 +43,9 @@ name and encode them
See below for a description of the json file that defines which columns are
pulled from the population VCF.

> you can get a pre-made 6.8GB echtvar file from gnomad v3.1.2 (hg38 whole genomes) with this command:
> you can get a pre-made 7.1GB echtvar file from gnomad v3.1.2 (hg38 whole genomes) with this command:
> ```
> curl -L -o gnomad.v3.1.2.echtvar.zip https://surfdrive.surf.nl/files/index.php/s/O4mehMM7b3cmK9s/download
> curl -L -o gnomad.v3.1.2.echtvar.v2.zip https://surfdrive.surf.nl/files/index.php/s/nJPDxM3b9C7hkM2
> ```
annotate a VCF with an echtvar file and only output variants where `gnomad_af`
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