lighter 1.1.3 #2060
Annotations
4 errors
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Run brew test-bot --only-formulae --only-json-tab --skip-recursive-dependents --root-url="https://ghcr.io/v2/brewsci/bio":
Formula/shovill.rb#L32
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/bin/bundle clean
==> Testing brewsci/bio/shovill
==> /home/linuxbrew/.linuxbrew/Cellar/shovill/1.1.0/bin/shovill --version 2>&1
==> /home/linuxbrew/.linuxbrew/Cellar/shovill/1.1.0/bin/shovill --help 2>&1
==> /home/linuxbrew/.linuxbrew/Cellar/shovill/1.1.0/bin/shovill --check
[shovill] Using bwa - /home/linuxbrew/.linuxbrew/bin/bwa | Version: 0.7.18-r1243-dirty
[shovill] Using flash - /home/linuxbrew/.linuxbrew/bin/flash | FLASH v1.2.11
[shovill] Using java - /home/linuxbrew/.linuxbrew/bin/java | openjdk version "22.0.2" 2024-07-16
[shovill] Using kmc - /home/linuxbrew/.linuxbrew/bin/kmc | K-Mer Counter (KMC) ver. 3.2.4 (2024-02-09)
[shovill] Using lighter - /home/linuxbrew/.linuxbrew/bin/lighter | Lighter v1.1.3
[shovill] Could not find 'megahit' - please install it.
Error: brewsci/bio/shovill: failed
::error::brewsci/bio/shovill: failed
An exception occurred within a child process:
BuildError: Failed executing: /home/linuxbrew/.linuxbrew/Cellar/shovill/1.1.0/bin/shovill --check
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:3058:in `block in system'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2994:in `open'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2994:in `system'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/sorbet-runtime-0.5.11535/lib/types/private/methods/call_validation.rb:270:in `bind_call'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/sorbet-runtime-0.5.11535/lib/types/private/methods/call_validation.rb:270:in `validate_call'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/sorbet-runtime-0.5.11535/lib/types/private/methods/_methods.rb:277:in `block in _on_method_added'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/shovill.rb:35:in `block in <class:Shovill>'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2800:in `block (3 levels) in run_test'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/extend/kernel.rb:536:in `with_env'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2799:in `block (2 levels) in run_test'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:1193:in `with_logging'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2798:in `block in run_test'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/mktemp.rb:75:in `block in run'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/mktemp.rb:75:in `chdir'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/mktemp.rb:75:in `run'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:3109:in `mktemp'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2792:in `run_test'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/test.rb:48:in `block in <main>'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:186:in `block in timeout'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:41:in `handle_timeout'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:195:in `timeout'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/test.rb:52:in `<main>'
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Run brew test-bot --only-formulae --only-json-tab --skip-recursive-dependents --root-url="https://ghcr.io/v2/brewsci/bio"
Process completed with exit code 1.
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