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CPX_TYPE for CTX #664

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epiercehoffman opened this issue Apr 4, 2024 · 0 comments
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CPX_TYPE for CTX #664

epiercehoffman opened this issue Apr 4, 2024 · 0 comments
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@epiercehoffman
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The CPX_TYPE for CTX records should be CTX_PP/QQ or CTX_PQ/QP. This is expected by downstream tools like ManualReview.wdl and SVAnnotate. In a recent callset, it was observed that the CPX_TYPE for CTX records was CTX. We need to investigate where this annotation is getting dropped.
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@mwalker174 @epiercehoffman