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73 Open 161 Closed
73 Open 161 Closed
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Issues list

Throw error for untested Dragen versions
#739 opened Oct 25, 2024 by mwalker174
Scramble sensitivity tuning
#735 opened Oct 21, 2024 by mwalker174
Consolidate documentation
#730 opened Sep 30, 2024 by mwalker174
Release AoU-SV Phase 2 GQRecalibrator model
#729 opened Sep 30, 2024 by mwalker174
GATKSVPipelineSingleSample is missing from Dockstore automation bug Something isn't working
#724 opened Sep 16, 2024 by VJalili
@VJalili
Handle rare cases in CPX evidence assessment
#718 opened Aug 26, 2024 by epiercehoffman
I want to combine data using MakeCohortVcf after processing 500 samples multiple times in cohort mode
#715 opened Aug 20, 2024 by c2997108
5
Problem creating gatk-sv Workflow in AWS HealthOmics
#714 opened Aug 20, 2024 by eprdz
3
Pipeline version header metadata
#704 opened Aug 7, 2024 by mwalker174
RdTest does not plot variants for which all samples are carriers
#694 opened Jun 28, 2024 by epiercehoffman
6F adjustment metadata matrices
#688 opened Jun 6, 2024 by Dagsbio
3
Add support for annotating external AF from multiple datasets enhancement New feature or request
#678 opened May 28, 2024 by epiercehoffman
keep unresloved manta SVs and cluster them methods
#676 opened May 17, 2024 by xuefzhao
MEI to be calculated in MainVcfQc enhancement New feature or request
#667 opened Apr 19, 2024 by xuefzhao
1
AD values in Annotation aren't Integers bug Something isn't working
#663 opened Apr 3, 2024 by MattWellie
Annotate GD region overlap in AnnotateVcf enhancement New feature or request
#660 opened Mar 29, 2024 by epiercehoffman
svtk vcfcluster creates lists of INFO values when Number = 1 methods
#659 opened Mar 26, 2024 by epiercehoffman
1
Filter allosomal genotypes for samples with unassigned sex bug Something isn't working
#658 opened Mar 21, 2024 by mwalker174
@kirtanav98
ImportError: dlopen: cannot load any more object with static TLS
#656 opened Mar 15, 2024 by jingydz
1
ScramblePart1 139 error code bug Something isn't working
#652 opened Mar 6, 2024 by MattWellie
1
Modification of parameters documentation Improvements or additions to documentation question Further information is requested
#651 opened Mar 2, 2024 by andrewruttenberg
1
Look into higher than expected numbers of large CPX events methods
#648 opened Feb 27, 2024 by epiercehoffman
task SDtoBAF calls SiteDepthtoBAF without passing required index file bug Something isn't working
#643 opened Feb 12, 2024 by simojoe
1
How can I apply downstream filtering steps to the cleaned VCF to further control the false discovery rate? question Further information is requested
#615 opened Oct 30, 2023 by elitefugua
1
Can't find the vcf_stats file（MergeVcfWideStats.merged_bed_file）, how to generate it? question Further information is requested
#606 opened Oct 8, 2023 by jingydz
1
ProTip! Exclude everything labeled bug with -label:bug.