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Build and Test GATK 4

Adding new argument to control variant output interval filtering. #4651

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Adding new argument to control variant output interval filtering.

Adding new argument to control variant output interval filtering. #4651

Run time

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Job Run time
build and push gatk docker to artifacts
16m 47s
Validate script WDLs using womtools
56s
check if the environment has privileges
1s
Validate generated WDLs using womtools
13m 53s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
24m 45s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
26m 0s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
24m 11s
WDL test RUN_M2_WDL on cromwell
17m 31s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
13m 9s
Java 17.0.6+10 build and test cloud
17m 52s
Java 17.0.6+10 build and test integration
35m 23s
Java 17.0.6+10 build and test unit
20m 59s
Java 17.0.6+10 test on docker integration
38m 48s
Java 17.0.6+10 test on docker unit
25m 35s
Java 17.0.6+10 test on docker variantcalling
32m 29s
Java 17.0.6+10 test on docker conda
25m 1s
5h 33m 20s