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Build and Test GATK 4

Adding new argument to control variant output interval filtering. #4654

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Adding new argument to control variant output interval filtering.

Adding new argument to control variant output interval filtering. #4654

Run time

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Job Run time
build and push gatk docker to artifacts
16m 48s
Validate generated WDLs using womtools
14m 15s
check if the environment has privileges
1s
Validate script WDLs using womtools
1m 8s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
27m 34s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
27m 15s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
26m 14s
WDL test RUN_M2_WDL on cromwell
17m 1s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
13m 34s
Java 17.0.6+10 build and test cloud
24m 51s
Java 17.0.6+10 build and test integration
32m 24s
Java 17.0.6+10 build and test unit
20m 24s
Java 17.0.6+10 test on docker integration
40m 32s
Java 17.0.6+10 test on docker unit
23m 26s
Java 17.0.6+10 test on docker variantcalling
33m 9s
Java 17.0.6+10 test on docker conda
25m 37s
5h 44m 13s