FlowFeatureMapper speed improvements #4662

Job	Run time
check if the environment has privileges	1s
check if the environment has privileges	1s
build and push gatk docker to artifacts	16m 17s
build and push gatk docker to artifacts	16m 17s
Validate generated WDLs using womtools	14m 10s
Validate generated WDLs using womtools	14m 10s
Validate script WDLs using womtools	1m 11s
Validate script WDLs using womtools	1m 11s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	23m 54s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	23m 54s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	32m 48s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	32m 48s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 56s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 56s
WDL test RUN_M2_WDL on cromwell	17m 14s
WDL test RUN_M2_WDL on cromwell	17m 14s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 10s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 10s
Java 17.0.6+10 build and test cloud	3m 30s
Java 17.0.6+10 build and test cloud	3m 30s
Java 17.0.6+10 build and test integration	31m 41s
Java 17.0.6+10 build and test integration	29m 30s
Java 17.0.6+10 build and test unit	20m 40s
Java 17.0.6+10 build and test unit	20m 40s
Java 17.0.6+10 test on docker integration	34m 49s
Java 17.0.6+10 test on docker integration	35m 21s
Java 17.0.6+10 test on docker unit	22m 4s
Java 17.0.6+10 test on docker unit	22m 4s
Java 17.0.6+10 test on docker variantcalling	32m 10s
Java 17.0.6+10 test on docker variantcalling	32m 10s
Java 17.0.6+10 test on docker conda	25m 8s
Java 17.0.6+10 test on docker conda	25m 8s
	10h 25m 47s

Provide feedback