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Update FlowFeatureMapper.java
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dror27 committed May 6, 2024
1 parent af48084 commit 3beb95c
Showing 1 changed file with 1 addition and 1 deletion.
Original file line number Diff line number Diff line change
Expand Up @@ -337,7 +337,7 @@ public VCFHeader makeVCFHeader(final SAMSequenceDictionary sequenceDictionary, f
headerInfo.add(new VCFInfoHeaderLine(VCF_MAPQ, 1, VCFHeaderLineType.Integer, "Read mapqe"));
headerInfo.add(new VCFInfoHeaderLine(VCF_CIGAR, 1, VCFHeaderLineType.String, "Read CIGAR"));
headerInfo.add(new VCFInfoHeaderLine(VCF_READ_COUNT, 1, VCFHeaderLineType.Integer, "Number of reads containing this location"));
headerInfo.add(new VCFInfoHeaderLine(VCF_FILTERED_COUNT, 1, VCFHeaderLineType.Integer, "Number of reads containing this location that agree with reference according and pass the adjacent base filter"));
headerInfo.add(new VCFInfoHeaderLine(VCF_FILTERED_COUNT, 1, VCFHeaderLineType.Integer, "Number of reads containing this location that agree with reference and pass the adjacent base filter"));
headerInfo.add(new VCFInfoHeaderLine(VCF_FC1, 1, VCFHeaderLineType.Integer, "Number of M bases different on read from references"));
headerInfo.add(new VCFInfoHeaderLine(VCF_FC2, 1, VCFHeaderLineType.Integer, "Number of features before score threshold filter"));
headerInfo.add(new VCFInfoHeaderLine(VCF_LENGTH, 1, VCFHeaderLineType.Integer, "Read length"));
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