Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

deprecate and remove IntervalSkipList #3608

Closed
lbergelson opened this issue Sep 25, 2017 · 0 comments
Closed

deprecate and remove IntervalSkipList #3608

lbergelson opened this issue Sep 25, 2017 · 0 comments
Assignees
@davidbenjamin

Comments

@lbergelson
Copy link
Member

lbergelson commented Sep 25, 2017 •
edited
Loading

I believe we discovered that IntervalSkipList had worse performance than htsjdk's OverlapDetector. It's probably best to remove IntervalSkipList in this case and prefer the htsjdk version.
@lbergelson lbergelson mentioned this issue Sep 25, 2017
Closed
@davidbenjamin davidbenjamin self-assigned this Jan 14, 2018
@davidbenjamin davidbenjamin mentioned this issue Jan 14, 2018
Merged
lbergelson pushed a commit that referenced this issue Feb 8, 2019
@davidbenjamin @lbergelson
Delete unused classes and Context (#4154)
a84f466 
* Deleting unused classes ContextShard, IntervalSkipList, and related tests / classes.
* Closes #3541
* Closes #3608
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@davidbenjamin davidbenjamin

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@lbergelson @davidbenjamin