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Added code and WDL to complete ModelSegments CNV pipeline. #3913

Merged
merged 11 commits into from
Dec 14, 2017
Merged

Added code and WDL to complete ModelSegments CNV pipeline. #3913

merged 11 commits into from
Dec 14, 2017

Commits on Dec 14, 2017

  1. Updated CallCopyRatioSegments and PreprocessIntervals; reorganized co… 

    …pynumber packages.
    @samuelklee
    samuelklee committed Dec 14, 2017
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  2. Added segmentation classes and tests for ModelSegments CNV pipeline.

    @samuelklee
    samuelklee committed Dec 14, 2017
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  3. Added modeling classes and tests for ModelSegments CNV pipeline.

    @samuelklee
    samuelklee committed Dec 14, 2017
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  4. Added ModelSegments CLI.

    @samuelklee
    samuelklee committed Dec 14, 2017
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  5. Deleted gCNV WDL and Cromwell tests.

    @samuelklee
    samuelklee committed Dec 14, 2017
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  6. Added WDL and Cromwell tests for ModelSegments CNV pipeline.

    @samuelklee
    samuelklee committed Dec 14, 2017
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  7. Responded to Andrey's review of ModelSegments CLI.

    @samuelklee
    samuelklee committed Dec 14, 2017
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  8. Addressed remaining PR comments.

    @samuelklee
    samuelklee committed Dec 14, 2017
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  9. Fixed WDL readme.

    @samuelklee
    samuelklee committed Dec 14, 2017
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  10. Fixed SD kebab case broken after rebase.

    @samuelklee
    samuelklee committed Dec 14, 2017
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  11. Fixed imr kebab case.

    @samuelklee
    samuelklee committed Dec 14, 2017
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