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realignment filter in M2 wdl #4848

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merged 2 commits into from
Jun 5, 2018
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davidbenjamin
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@LeeTL1220 This is worth getting in before the release.

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Just needs some docs.

@@ -73,6 +73,8 @@ workflow Mutect2 {
File? gnomad_index
File? variants_for_contamination
File? variants_for_contamination_index
File? realignment_index_bundle
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Can you update the comments and any relevant READMEs?

@@ -74,6 +74,8 @@ workflow Mutect2 {
Int scatter_count
File? gnomad
File? variants_for_contamination
File? realignment_index_bundle
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Could you add comments above?

@davidbenjamin davidbenjamin merged commit ae23cc0 into master Jun 5, 2018
@davidbenjamin davidbenjamin deleted the db_realignment_in_m2_wdl branch June 5, 2018 01:14
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2 participants