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Updating splice site logic. #5106

Merged
merged 3 commits into from
Aug 15, 2018
Merged

Updating splice site logic. #5106

merged 3 commits into from
Aug 15, 2018

Commits on Aug 14, 2018

  1. Updating splice site logic. 

    Now ignores leading indel bases when checking if variants are within the
splice site boundaries (i.e. if a leading base in an indel, which is
    preserved between the reference and alternate alleles, is within the
    splice site boundary but the bases that have been changed are NOT,
    then the variant is now correctly labeled as NOT a splice site).

Fixes #5050
    @jonn-smith
    jonn-smith committed Aug 14, 2018
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  2. Addressing review comments. 

    Added more test cases and adjusted algorithm to account for inserted
bases when dealing with insertions.
    @jonn-smith
    jonn-smith committed Aug 14, 2018
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Commits on Aug 15, 2018

  1. Addressing @LeeTL1220 latest comment.

    @jonn-smith
    jonn-smith committed Aug 15, 2018
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