Added ExcessiveEndClippedReadFilter #7638
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- Added ExcessiveEndClippedReadFilter - a filter that will keep reads that have fewer than the specified number of clipped bases on either end. This is designed for long reads, and has a default value of 1k.
lbergelson
approved these changes
Jan 13, 2022
| ) | ||
| public final class ExcessiveEndClippedReadFilter extends ReadFilter { | ||
| static final long serialVersionUID = 1L; | ||
| private final Logger logger = LogManager.getLogger(this.getClass()); |
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Is the logger actually used? You could probably drop it.
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Sounds good.
Fixed!
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that have fewer than the specified number of clipped bases on either
end. This is designed for long reads, and has a default value of 1k.