Adding small warning messages to not to feed any GVCF files to these tools #9008
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lbergelson
approved these changes
Oct 18, 2024
src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/VariantAnnotator.java
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src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/VariantAnnotator.java
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src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/VariantRecalibrator.java
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…/VariantRecalibrator.java Co-authored-by: Louis Bergelson <[email protected]>
…tator/VariantAnnotator.java Co-authored-by: Louis Bergelson <[email protected]>
…tator/VariantAnnotator.java Co-authored-by: Louis Bergelson <[email protected]>
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Users tend to feed GVCF files to these 3 tools primarily that ends up giving error messages of missing annotations or else. I added these warning messages.