PD-2803: Fixing Optimus h5ad generation to handle gene_ids more flexibly #916
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| name: WARP Validate Changelog | |
| # Controls when the workflow will run | |
| on: | |
| #Changing trigger to all PRs for all branches | |
| pull_request: | |
| #branches: [ "develop" ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # inputs: | |
| # image_tag: | |
| # description: 'Docker Image Tag (default: branch_name)' | |
| env: | |
| PROJECT_NAME: WARP | |
| # Github repo name | |
| REPOSITORY_NAME: ${{ github.event.repository.name }} | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # The job that builds our container | |
| validate-changelog: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # defaults: | |
| # run: | |
| # working-directory: tools | |
| # Map a step output to a job output | |
| # outputs: | |
| # imagePath: ${{ steps.saveImagePath.outputs.url }} | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all tags and branches | |
| - name: Check working directory | |
| run: | | |
| echo "Current directory: " | |
| pwd | |
| ls -lht | |
| - name: Set up Git | |
| run: | | |
| git fetch --all | |
| - name: Validate changelogs | |
| id: validate_script | |
| run: | | |
| set -e | |
| echo "Validating changelog for ${{ github.base_ref }}" | |
| result=$(scripts/validate_release.sh -g origin/${{ github.base_ref }} -i true 2>&1 || echo "validation_failed") # don't exit on script failure | |
| # Escape newlines, carriage returns, and percent signs | |
| escaped_result=$(echo "$result" | sed ':a;N;$!ba;s/\r/\\r/g;s/\n/\\n/g;s/%/%%/g') | |
| echo "result=$escaped_result" >> $GITHUB_OUTPUT | |
| - name: Post validation results as a comment | |
| if: always() # This ensures it runs regardless of previous step success/failure | |
| uses: actions/github-script@v7 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| script: | | |
| try { | |
| const output = "${{ steps.validate_script.outputs.result }}".replace(/\\n/g, '\n').replace(/\\r/g, '\r'); | |
| const issue_number = context.payload.pull_request.number; | |
| const message = `### 🔍Changelog Validation Results:\n\`\`\`\n${output}\n\`\`\``; | |
| github.rest.issues.createComment({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| issue_number: issue_number, | |
| body: message | |
| }); | |
| } catch (error) { | |
| console.error('Failed to post comment:', error); | |
| } | |
| - name: Fail if validation failed | |
| if: contains(steps.validate_script.outputs.result, 'validation_failed') | |
| run: exit 1 | |