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Ensure consistency between init.sh and init_hg38.sh #29

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merged 1 commit into from
Oct 28, 2024

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kojix2
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@kojix2 kojix2 commented Oct 27, 2024

Before

init.sh

#!/usr/bin/env bash
for d in config data study; do
    cd $d; ./init.sh
    cd ..
done

# add override docker file for arm64
# see https://github.com/cBioPortal/cbioportal/issues/9829
if [[ ! -f "docker-compose.override.yml" ]] && [[ "$(arch)" = "arm64" ]]; then
    cp docker-compose.arm64.yml docker-compose.override.yml
fi

init_hg38.sh

#!/usr/bin/env bash
for d in config study; do
    cd $d; ./init.sh
    cd ..
done
for d in data; do
    cd $d; ./init_hg38.sh
    cd ..
done

After

init_hg38.sh

#!/usr/bin/env bash
for d in config study; do
    cd $d; ./init.sh
    cd ..
done
for d in data; do
    cd $d; ./init_hg38.sh
    cd ..
done

# add override docker file for arm64
# see https://github.com/cBioPortal/cbioportal/issues/9829
if [[ ! -f "docker-compose.override.yml" ]] && [[ "$(arch)" = "arm64" ]]; then
    cp docker-compose.arm64.yml docker-compose.override.yml
fi

@inodb inodb merged commit 1fc10cc into cBioPortal:master Oct 28, 2024
@kojix2 kojix2 deleted the patch-1 branch October 29, 2024 07:45
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2 participants