Impl. structural variants table in study view

cBioPortal · Apr 4, 2023 · 0311f26 · 0311f26
1 parent 5eafa94
commit 0311f26
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Showing 19 changed files with 2,427 additions and 107 deletions.
diff --git a/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI-docs.json b/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI-docs.json
@@ -5901,6 +5901,65 @@
       },
       "title": "ServerStatusMessage"
     },
+    "StructVarFilterQuery": {
+      "type": "object",
+      "properties": {
+        "gene1Query": {
+          "$ref": "#/definitions/StructuralVariantGeneSubQuery"
+        },
+        "gene2Query": {
+          "$ref": "#/definitions/StructuralVariantGeneSubQuery"
+        },
+        "includeDriver": {
+          "type": "boolean"
+        },
+        "includeGermline": {
+          "type": "boolean"
+        },
+        "includeSomatic": {
+          "type": "boolean"
+        },
+        "includeUnknownOncogenicity": {
+          "type": "boolean"
+        },
+        "includeUnknownStatus": {
+          "type": "boolean"
+        },
+        "includeUnknownTier": {
+          "type": "boolean"
+        },
+        "includeVUS": {
+          "type": "boolean"
+        },
+        "tiersBooleanMap": {
+          "type": "object",
+          "additionalProperties": {
+            "type": "boolean"
+          }
+        }
+      },
+      "title": "StructVarFilterQuery"
+    },
+    "StructuralVariantGeneSubQuery": {
+      "type": "object",
+      "properties": {
+        "entrezId": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "hugoSymbol": {
+          "type": "string"
+        },
+        "specialValue": {
+          "type": "string",
+          "enum": [
+            "ANY_GENE",
+            "NO_GENE"
+          ]
+        }
+      },
+      "title": "StructuralVariantGeneSubQuery"
+    },
     "StudyViewFilter": {
       "type": "object",
       "properties": {
@@ -5985,6 +6044,12 @@
         "sampleTreatmentTargetFilters": {
           "$ref": "#/definitions/AndedSampleTreatmentFilters"
         },
+        "structuralVariantFilters": {
+          "type": "array",
+          "items": {
+            "$ref": "#/definitions/StudyViewStructuralVariantFilter"
+          }
+        },
         "studyIds": {
           "type": "array",
           "items": {
@@ -5994,6 +6059,28 @@
       },
       "title": "StudyViewFilter"
     },
+    "StudyViewStructuralVariantFilter": {
+      "type": "object",
+      "properties": {
+        "molecularProfileIds": {
+          "type": "array",
+          "uniqueItems": true,
+          "items": {
+            "type": "string"
+          }
+        },
+        "structVarQueries": {
+          "type": "array",
+          "items": {
+            "type": "array",
+            "items": {
+              "$ref": "#/definitions/StructVarFilterQuery"
+            }
+          }
+        }
+      },
+      "title": "StudyViewStructuralVariantFilter"
+    },
     "TypeOfCancer": {
       "type": "object",
       "required": [

diff --git a/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI.ts b/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI.ts
@@ -701,6 +701,36 @@ export type SampleTreatmentRow = {
 export type ServerStatusMessage = {
     'status': string
 
+};
+export type StructVarFilterQuery = {
+    'gene1Query': StructuralVariantGeneSubQuery
+
+        'gene2Query': StructuralVariantGeneSubQuery
+
+        'includeDriver': boolean
+
+        'includeGermline': boolean
+
+        'includeSomatic': boolean
+
+        'includeUnknownOncogenicity': boolean
+
+        'includeUnknownStatus': boolean
+
+        'includeUnknownTier': boolean
+
+        'includeVUS': boolean
+
+        'tiersBooleanMap': {}
+
+};
+export type StructuralVariantGeneSubQuery = {
+    'entrezId': number
+
+        'hugoSymbol': string
+
+        'specialValue': "ANY_GENE" | "NO_GENE"
+
 };
 export type StudyViewFilter = {
     'alterationFilter': AlterationFilter
@@ -737,8 +767,17 @@ export type StudyViewFilter = {
 
         'sampleTreatmentTargetFilters': AndedSampleTreatmentFilters
 
+        'structuralVariantFilters': Array < StudyViewStructuralVariantFilter >
+
         'studyIds': Array < string >
 
+};
+export type StudyViewStructuralVariantFilter = {
+    'molecularProfileIds': Array < string >
+
+        'structVarQueries': Array < Array < StructVarFilterQuery >
+        >
+
 };
 export type TypeOfCancer = {
     'cancerTypeId': string