Merge pull request #4962 from leexgh/gn-api-model-0812

Update Genome Nexus API client to include Alpha Missense
cBioPortal · Aug 12, 2024 · 29a5a89 · 29a5a89
2 parents dcae06d + 797e4d9
commit 29a5a89
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Showing 4 changed files with 66 additions and 5 deletions.
diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json
@@ -1348,6 +1348,18 @@
         }
       }
     },
+    "AlphaMissense": {
+      "type": "object",
+      "properties": {
+        "pathogenicity": {
+          "type": "string"
+        },
+        "score": {
+          "type": "number",
+          "format": "double"
+        }
+      }
+    },
     "ArticleAbstract": {
       "type": "object",
       "properties": {
@@ -3309,6 +3321,9 @@
         "transcript_id"
       ],
       "properties": {
+        "alphaMissense": {
+          "$ref": "#/definitions/AlphaMissense"
+        },
         "amino_acids": {
           "type": "string",
           "description": "Amino acids"
@@ -3413,6 +3428,9 @@
         "transcriptId"
       ],
       "properties": {
+        "alphaMissense": {
+          "$ref": "#/definitions/AlphaMissense"
+        },
         "aminoAcidAlt": {
           "type": "string",
           "description": "Alt Amino Acid"
@@ -3725,6 +3743,9 @@
         "variant"
       ],
       "properties": {
+        "alphaMissense": {
+          "$ref": "#/definitions/AlphaMissense"
+        },
         "assemblyName": {
           "type": "string",
           "description": "Assembly name"

diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI.ts b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI.ts
@@ -72,6 +72,12 @@ export type AlleleNumber = {
 export type Alleles = {
     'allele': string
 
+};
+export type AlphaMissense = {
+    'pathogenicity': string
+
+        'score': number
+
 };
 export type ArticleAbstract = {
     'abstract': string
@@ -840,7 +846,9 @@ export type StatsByTumorType = {
 
 };
 export type TranscriptConsequence = {
-    'amino_acids': string
+    'alphaMissense': AlphaMissense
+
+        'amino_acids': string
 
         'canonical': string
 
@@ -886,7 +894,9 @@ export type TranscriptConsequence = {
 
 };
 export type TranscriptConsequenceSummary = {
-    'aminoAcidAlt': string
+    'alphaMissense': AlphaMissense
+
+        'aminoAcidAlt': string
 
         'aminoAcidRef': string
 
@@ -1026,7 +1036,9 @@ export type VariantAnnotation = {
 
 };
 export type VariantAnnotationSummary = {
-    'assemblyName': string
+    'alphaMissense': AlphaMissense
+
+        'assemblyName': string
 
         'canonicalTranscriptId': string
 

diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal-docs.json b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal-docs.json
@@ -1104,6 +1104,18 @@
         }
       }
     },
+    "AlphaMissense": {
+      "type": "object",
+      "properties": {
+        "pathogenicity": {
+          "type": "string"
+        },
+        "score": {
+          "type": "number",
+          "format": "double"
+        }
+      }
+    },
     "Cosmic": {
       "type": "object",
       "properties": {
@@ -2211,6 +2223,9 @@
         "transcriptId"
       ],
       "properties": {
+        "alphaMissense": {
+          "$ref": "#/definitions/AlphaMissense"
+        },
         "aminoAcidAlt": {
           "type": "string",
           "description": "Alt Amino Acid"
@@ -2306,6 +2321,9 @@
         "variant"
       ],
       "properties": {
+        "alphaMissense": {
+          "$ref": "#/definitions/AlphaMissense"
+        },
         "assemblyName": {
           "type": "string",
           "description": "Assembly name"

diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal.ts b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal.ts
@@ -76,6 +76,12 @@ export type AlleleNumber = {
 export type Alleles = {
     'allele': string
 
+};
+export type AlphaMissense = {
+    'pathogenicity': string
+
+        'score': number
+
 };
 export type Cosmic = {
     'alt': string
@@ -542,7 +548,9 @@ export type StatsByTumorType = {
 
 };
 export type TranscriptConsequenceSummary = {
-    'aminoAcidAlt': string
+    'alphaMissense': AlphaMissense
+
+        'aminoAcidAlt': string
 
         'aminoAcidRef': string
 
@@ -586,7 +594,9 @@ export type TranscriptConsequenceSummary = {
 
 };
 export type VariantAnnotationSummary = {
-    'assemblyName': string
+    'alphaMissense': AlphaMissense
+
+        'assemblyName': string
 
         'canonicalTranscriptId': string