update mutation mapper version, left align gnomad column

cBioPortal · Jan 21, 2020 · 766bd29 · 766bd29
1 parent 92ac523
commit 766bd29
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Showing 4 changed files with 7 additions and 16 deletions.
diff --git a/packages/react-mutation-mapper/src/component/gnomad/GnomadFrequency.tsx b/packages/react-mutation-mapper/src/component/gnomad/GnomadFrequency.tsx
@@ -148,8 +148,8 @@ export default class GnomadFrequency extends React.Component<GnomadFrequencyProp
                 display = (
                     <span>
                         {result['Total'].alleleFrequency.toLocaleString(undefined, {
-                            maximumSignificantDigits: 4,
-                            minimumSignificantDigits: 1,
+                            maximumSignificantDigits: 2,
+                            minimumSignificantDigits: 2,
                         })}
                     </span>
                 );

diff --git a/packages/react-mutation-mapper/src/component/gnomad/GnomadFrequencyTable.tsx b/packages/react-mutation-mapper/src/component/gnomad/GnomadFrequencyTable.tsx
@@ -23,8 +23,8 @@ export function frequencyOutput(frequency: number) {
         return (
             <span>
                 {frequency.toLocaleString(undefined, {
-                    maximumSignificantDigits: 4,
-                    minimumSignificantDigits: 1,
+                    maximumSignificantDigits: 2,
+                    minimumSignificantDigits: 2,
                 })}
             </span>
         );

diff --git a/src/shared/components/mutationTable/MutationTable.tsx b/src/shared/components/mutationTable/MutationTable.tsx
@@ -597,7 +597,7 @@ export default class MutationTable<P extends IMutationTableProps> extends React.
             Overall population allele frequency is shown. Hover over a frequency to see the frequency for each specific population.</span>),
             defaultSortDirection: "desc",
             visible: false,
-            align: "right"
+            align: "left"
         };
 
         this._columns[MutationTableColumnType.CLINVAR] = {

diff --git a/src/shared/components/mutationTable/column/GnomadColumnFormatter.tsx b/src/shared/components/mutationTable/column/GnomadColumnFormatter.tsx
@@ -3,30 +3,21 @@ import {Circle} from "better-react-spinkit";
 import 'rc-tooltip/assets/bootstrap_white.css';
 import {Mutation} from "shared/api/generated/CBioPortalAPI";
 import {
-    DefaultTooltip,
     TableCellStatusIndicator,
     TableCellStatus,
     MyVariantInfo,
-    MyVariantInfoAnnotation,
-    Gnomad,
-    AlleleCount,
-    AlleleNumber,
-    Homozygotes,
-    AlleleFrequency
+    MyVariantInfoAnnotation
 } from 'cbioportal-frontend-commons';
 import GenomeNexusMyVariantInfoCache, { GenomeNexusCacheDataType } from "shared/cache/GenomeNexusMyVariantInfoCache";
 import {calculateGnomadAllelFrequency, GnomadFrequency, gnomadSortValue} from "react-mutation-mapper";
-import generalStyles from "./styles.module.scss";
 
 export default class GnomadColumnFormatter {
 
     public static renderFunction(data: Mutation[],
                                  genomeNexusMyVariantInfoCache: GenomeNexusMyVariantInfoCache | undefined) {
         const genomeNexusCacheData = GnomadColumnFormatter.getGenomeNexusDataFromCache(data, genomeNexusMyVariantInfoCache);
         return (
-            <div className={generalStyles["integer-data"]}>
-                <span data-test='gnomad-column' data-test2={data[0].sampleId}>{GnomadColumnFormatter.getGnomadDataViz(genomeNexusCacheData)}</span>
-            </div>
+            <span data-test='gnomad-column' data-test2={data[0].sampleId}>{GnomadColumnFormatter.getGnomadDataViz(genomeNexusCacheData)}</span>
         );
     }