add "Files & Links" tab of the Patient View to the Study View (#10467)

cBioPortal · Aug 19, 2024 · c9cedb7 · c9cedb7
1 parent 9ca3198
commit c9cedb7
Show file tree

Hide file tree

Showing 5 changed files with 430 additions and 16 deletions.
diff --git a/src/pages/studyView/StudyViewPage.tsx b/src/pages/studyView/StudyViewPage.tsx
@@ -378,11 +378,8 @@ export default class StudyViewPage extends React.Component<
     }
 
     @computed get shouldShowResources() {
-        if (this.store.resourceIdToResourceData.isComplete) {
-            return _.some(
-                this.store.resourceIdToResourceData.result,
-                data => data.length > 0
-            );
+        if (this.store.resourceDefinitions.isComplete) {
+            return this.store.resourceDefinitions.result.length > 0;
         } else {
             return false;
         }

diff --git a/src/pages/studyView/StudyViewPageStore.ts b/src/pages/studyView/StudyViewPageStore.ts
@@ -5784,6 +5784,43 @@ export class StudyViewPageStore
         },
     });
 
+    readonly sampleResourceData = remoteData<{
+        [sampleId: string]: ResourceData[];
+    }>({
+        await: () => [this.resourceDefinitions, this.samples],
+        invoke: () => {
+            const sampleResourceDefinitions = this.resourceDefinitions.result!.filter(
+                d => d.resourceType === 'SAMPLE'
+            );
+            if (!sampleResourceDefinitions.length) {
+                return Promise.resolve({});
+            }
+
+            const samples = this.samples.result!;
+            const ret: { [sampleId: string]: ResourceData[] } = {};
+            const promises = [];
+            for (const sample of samples) {
+                for (const resource of sampleResourceDefinitions) {
+                    promises.push(
+                        internalClient
+                            .getAllResourceDataOfSampleInStudyUsingGET({
+                                sampleId: sample.sampleId,
+                                studyId: sample.studyId, // TODO:
+                                resourceId: resource.resourceId,
+                                projection: 'DETAILED',
+                            })
+                            .then(data => {
+                                ret[sample.sampleId] =
+                                    ret[sample.sampleId] || [];
+                                ret[sample.sampleId].push(...data);
+                            })
+                    );
+                }
+            }
+            return Promise.all(promises).then(() => ret);
+        },
+    });
+
     readonly resourceIdToResourceData = remoteData<{
         [resourceId: string]: ResourceData[];
     }>({