Filter fusion and structural varinat profiles while getting non mutat…

…ion profiles
cBioPortal · Jan 22, 2020 · f485685 · f485685
1 parent 694a016
commit f485685
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Showing 2 changed files with 10 additions and 12 deletions.
diff --git a/src/pages/resultsView/ResultsViewPageStore.ts b/src/pages/resultsView/ResultsViewPageStore.ts
@@ -126,6 +126,7 @@ import {
     isRNASeqProfile,
     makeEnrichmentDataPromise,
     getMolecularProfiles,
+    excludeMutationAndSVProfiles,
 } from './ResultsViewPageStoreUtils';
 import MobxPromiseCache from '../../shared/lib/MobxPromiseCache';
 import {isSampleProfiledInMultiple} from '../../shared/lib/isSampleProfiled';
@@ -202,6 +203,7 @@ export const AlterationTypeConstants = {
     GENESET_SCORE: 'GENESET_SCORE',
     METHYLATION: 'METHYLATION',
     GENERIC_ASSAY: 'GENERIC_ASSAY',
+    STRUCTURAL_VARIANT: 'STRUCTURAL_VARIANT'
 };
 
 // only show TREATMENT_RESPONSE in the plots tab for now
@@ -1211,11 +1213,7 @@ export class ResultsViewPageStore {
         ],
         invoke: () => {
             // we get mutations with mutations endpoint, all other alterations with this one, so filter out mutation genetic profile
-            const profilesWithoutMutationProfile = _.filter(
-                this.selectedMolecularProfiles.result,
-                (profile: MolecularProfile) =>
-                    profile.molecularAlterationType !== 'MUTATION_EXTENDED'
-            );
+            const profilesWithoutMutationProfile = excludeMutationAndSVProfiles(this.selectedMolecularProfiles.result!);
             const genes = this.genes.result;
 
             if (
@@ -1270,12 +1268,7 @@ export class ResultsViewPageStore {
         ],
         invoke: () => {
             // we get mutations with mutations endpoint, all other alterations with this one, so filter out mutation genetic profile
-            const profilesWithoutMutationProfile = _.filter(
-                this.nonSelectedMolecularProfiles.result,
-                (profile: MolecularProfile) =>
-                    profile.molecularAlterationType !==
-                    AlterationTypeConstants.MUTATION_EXTENDED
-            );
+            const profilesWithoutMutationProfile = excludeMutationAndSVProfiles(this.nonSelectedMolecularProfiles.result);
             const genes = this.genes.result;
 
             if (

diff --git a/src/pages/resultsView/ResultsViewPageStoreUtils.ts b/src/pages/resultsView/ResultsViewPageStoreUtils.ts
@@ -20,7 +20,7 @@ import {
     AnnotatedMutation,
     CaseAggregatedData,
     IQueriedCaseData,
-    IQueriedMergedTrackCaseData, ResultsViewPageStore
+    IQueriedMergedTrackCaseData, ResultsViewPageStore, AlterationTypeConstants
 } from "./ResultsViewPageStore";
 import {IndicatorQueryResp, remoteData} from "cbioportal-frontend-commons";
 import _ from "lodash";
@@ -610,3 +610,8 @@ export function fetchPatients(samples:Sample[]) {
         patientFilter
     });
 }
+
+export function excludeMutationAndSVProfiles(molecularprofiles: MolecularProfile[]): MolecularProfile[] {
+    const mutationAlterationTypes = [AlterationTypeConstants.MUTATION_EXTENDED, AlterationTypeConstants.FUSION, AlterationTypeConstants.STRUCTURAL_VARIANT];
+    return molecularprofiles.filter(profile => !mutationAlterationTypes.includes(profile.molecularAlterationType));
+}