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pvannierop committed Mar 5, 2024
1 parent e26bd47 commit 9eeda41
Showing 1 changed file with 40 additions and 2 deletions.
42 changes: 40 additions & 2 deletions src/main/java/org/cbioportal/web/StudyViewController.java
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import org.apache.commons.math3.stat.correlation.PearsonsCorrelation;
import org.apache.commons.math3.stat.correlation.SpearmansCorrelation;
import org.apache.commons.math3.util.Pair;
import org.cbioportal.model.*;
import org.cbioportal.model.AlterationCountByGene;
import org.cbioportal.model.AlterationCountByStructuralVariant;
import org.cbioportal.model.AlterationFilter;
import org.cbioportal.model.CaseListDataCount;
import org.cbioportal.model.ClinicalAttribute;
import org.cbioportal.model.ClinicalData;
import org.cbioportal.model.ClinicalDataBin;
import org.cbioportal.model.ClinicalDataCountItem;
import org.cbioportal.model.ClinicalEventTypeCount;
import org.cbioportal.model.ClinicalViolinPlotData;
import org.cbioportal.model.CopyNumberCountByGene;
import org.cbioportal.model.DensityPlotBin;
import org.cbioportal.model.DensityPlotData;
import org.cbioportal.model.GenericAssayDataBin;
import org.cbioportal.model.GenericAssayDataCountItem;
import org.cbioportal.model.GenomicDataBin;
import org.cbioportal.model.GenomicDataCount;
import org.cbioportal.model.GenomicDataCountItem;
import org.cbioportal.model.Patient;
import org.cbioportal.model.Sample;
import org.cbioportal.model.SampleClinicalDataCollection;
import org.cbioportal.model.SampleList;
import org.cbioportal.service.ClinicalAttributeService;
import org.cbioportal.service.ClinicalDataService;
import org.cbioportal.service.ClinicalEventService;
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import org.cbioportal.service.exception.StudyNotFoundException;
import org.cbioportal.service.util.ClinicalAttributeUtil;
import org.cbioportal.web.config.annotation.InternalApi;
import org.cbioportal.web.parameter.*;
import org.cbioportal.web.parameter.ClinicalDataBinCountFilter;
import org.cbioportal.web.parameter.ClinicalDataBinFilter;
import org.cbioportal.web.parameter.ClinicalDataCountFilter;
import org.cbioportal.web.parameter.ClinicalDataFilter;
import org.cbioportal.web.parameter.DataBinMethod;
import org.cbioportal.web.parameter.Direction;
import org.cbioportal.web.parameter.GenericAssayDataBinCountFilter;
import org.cbioportal.web.parameter.GenericAssayDataCountFilter;
import org.cbioportal.web.parameter.GenericAssayDataFilter;
import org.cbioportal.web.parameter.GenomicDataBinCountFilter;
import org.cbioportal.web.parameter.GenomicDataCountFilter;
import org.cbioportal.web.parameter.GenomicDataFilter;
import org.cbioportal.web.parameter.HeaderKeyConstants;
import org.cbioportal.web.parameter.MutationOption;
import org.cbioportal.web.parameter.PagingConstants;
import org.cbioportal.web.parameter.Projection;
import org.cbioportal.web.parameter.SampleIdentifier;
import org.cbioportal.web.parameter.StudyViewFilter;
import org.cbioportal.web.util.ClinicalDataBinUtil;
import org.cbioportal.web.util.ClinicalDataFetcher;
import org.cbioportal.web.util.StudyViewFilterApplier;
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