Add CT Scans for all TCGA Pancan (#2015)

Add OHIF Viewer for all TCGA pancan studies. Add docs of how they were generated Co-authored-by: Ramya Madupuri <[email protected]>
cBioPortal · Aug 5, 2024 · 10e3d3a · 10e3d3a
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diff --git a/docs/tcga_pan_can_atlas/ohif-viewer.md b/docs/tcga_pan_can_atlas/ohif-viewer.md
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+# OHIF Viewer for TCGA CT Scans
+OHIF URLs for CT Scans were obtained from the Imaging Data Commons and added as
+resource data to all tcga_pan_can_2018 studies,
+
+## Steps
+### 1. Download Data from IDC
+
+Go to IDC and select TCGA -> CT Scans. Download a manifest with all the links to ~/Downloads/idc_ohif.tsv.
+
+### 2. Curate coadread_tcga semi-manually
+
+Add all *resource* files for coad and read data and link patients to samples. This was done semi-manually.
+
+### 3. Do the rest using a command one liner
+
+Generate them for the rest:
+```bash
+for f in $(cut -f2 ~/Downloads/idc_ohif.tsv | gsort | uniq | grep tcga_ | grep -v Filters | grep -v coad | grep -v read); do (head -1 coadread_tcga_pan_can_atlas_2018/data_resource_patient.txt; cut -f1,2,4 ~/Downloads/idc_ohif.tsv | tail -n +9 | grep $f | cut -f1,3 | awk -vFS='\t' -vOFS='\t' '{$1=substr($1,0,12); $3="https://viewer.imaging.datacommons.cancer.gov/viewer/"$2; $2="IDC_OHIF_V2"; print $0}' | gsort -k1,1 | uniq | rev | uniq -f2 | rev; ) > ${f/tcga_/}_tcga_pan_can_atlas_2018/*data_resource*patient*; done
+```
+
+Note: there are a few patients that have multiple CT Scans. Not entirely sure what the difference is, the above command just selects the first one
diff --git a/public/acc_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/acc_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/acc_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/acc_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/acc_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/acc_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: acc_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/acc_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/acc_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: acc_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/blca_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/blca_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/blca_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/blca_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/blca_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/blca_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: blca_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/blca_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/blca_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: blca_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/brca_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/brca_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/brca_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/brca_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/brca_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/brca_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: brca_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/brca_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/brca_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: brca_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/cesc_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/cesc_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/cesc_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/cesc_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/cesc_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/cesc_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: cesc_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/cesc_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/cesc_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: cesc_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/chol_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/chol_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/chol_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/chol_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/chol_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/chol_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: chol_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/chol_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/chol_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: chol_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/dlbc_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/dlbc_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/dlbc_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/dlbc_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/dlbc_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/dlbc_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: dlbc_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/dlbc_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/dlbc_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: dlbc_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/esca_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/esca_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/esca_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/esca_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/esca_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/esca_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: esca_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/esca_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/esca_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: esca_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/gbm_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/gbm_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/gbm_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/gbm_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/gbm_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/gbm_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: gbm_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/gbm_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/gbm_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: gbm_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/hnsc_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/hnsc_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/hnsc_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/hnsc_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/hnsc_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/hnsc_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/hnsc_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/hnsc_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/kich_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/kich_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/kich_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/kich_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/kich_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/kich_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: kich_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/kich_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/kich_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: kich_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/kirc_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/kirc_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/kirc_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/kirc_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/kirc_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/kirc_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: kirc_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/kirc_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/kirc_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: kirc_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/kirp_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/kirp_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/kirp_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/kirp_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/kirp_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/kirp_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: kirp_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/kirp_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/kirp_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: kirp_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/laml_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/laml_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/laml_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/laml_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/laml_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/laml_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: laml_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/laml_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/laml_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: laml_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/lgg_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/lgg_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/lgg_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/lgg_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/lgg_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/lgg_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: lgg_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/lgg_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/lgg_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: lgg_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/lihc_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/lihc_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/lihc_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/lihc_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/lihc_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/lihc_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: lihc_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/lihc_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/lihc_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: lihc_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/luad_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/luad_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/luad_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/luad_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/luad_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/luad_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: luad_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/luad_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/luad_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: luad_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/lusc_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/lusc_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/lusc_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/lusc_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/lusc_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/lusc_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: lusc_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/lusc_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/lusc_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: lusc_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/meso_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/meso_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/meso_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/meso_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/meso_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/meso_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: meso_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/meso_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/meso_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: meso_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/ov_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/ov_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/ov_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/ov_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/ov_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/ov_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: ov_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/ov_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/ov_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: ov_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/paad_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/paad_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/paad_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/paad_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/paad_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/paad_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: paad_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/paad_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/paad_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: paad_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/pcpg_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/pcpg_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/pcpg_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/pcpg_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/pcpg_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/pcpg_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: pcpg_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/pcpg_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/pcpg_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: pcpg_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/prad_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/prad_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/prad_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/prad_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/prad_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/prad_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: prad_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/prad_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/prad_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: prad_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/sarc_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/sarc_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/sarc_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/sarc_tcga_pan_can_atlas_2018/data_resource_patient.txt
diff --git a/public/sarc_tcga_pan_can_atlas_2018/meta_resource_definition.txt b/public/sarc_tcga_pan_can_atlas_2018/meta_resource_definition.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: sarc_tcga_pan_can_atlas_2018
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt
diff --git a/public/sarc_tcga_pan_can_atlas_2018/meta_resource_patient.txt b/public/sarc_tcga_pan_can_atlas_2018/meta_resource_patient.txt
@@ -0,0 +1,3 @@
+cancer_study_identifier: sarc_tcga_pan_can_atlas_2018
+resource_type: PATIENT
+data_filename: data_resource_patient.txt
diff --git a/public/skcm_tcga_pan_can_atlas_2018/data_resource_definition.txt b/public/skcm_tcga_pan_can_atlas_2018/data_resource_definition.txt
diff --git a/public/skcm_tcga_pan_can_atlas_2018/data_resource_patient.txt b/public/skcm_tcga_pan_can_atlas_2018/data_resource_patient.txt