no testdata in pip build

calico · Jun 30, 2021 · cb8dd88 · cb8dd88
1 parent 3aa7029
commit cb8dd88
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/setup.py b/setup.py
@@ -26,7 +26,7 @@
     install_requires=[
         l.strip() for l in Path("requirements.txt").read_text("utf-8").splitlines()
     ],
-    packages=find_packages(),
+    packages=find_packages(exclude="testdata"),
     entry_points=dict(
         console_scripts=["solo=solo.solo:main", "hashsolo=solo.hashsolo:main"],
     ),

diff --git a/testdata/performance_test_kidney_PoolB4FACs_L4_Rep1.sh b/testdata/performance_test_kidney_PoolB4FACs_L4_Rep1.sh
@@ -13,5 +13,5 @@
 echo "My SLURM_ARRAY_TASK_ID: " $SLURM_ARRAY_TASK_ID
 echo 'kidney'
 source activate solo-sc
-solo -p -a -g -r 2 --set-reproducible-seed "$SLURM_ARRAY_TASK_ID" -o results_kidney_"$SLURM_ARRAY_TASK_ID" ../solo_params_example.json gene_ad_filtered_PoolB4FACs_L4_Rep1.h5ad
+solo -p -a -g -r 2 --set-reproducible-seed "$SLURM_ARRAY_TASK_ID" -o results_kidney_"$SLURM_ARRAY_TASK_ID" -j ../solo_params_example.json -d gene_ad_filtered_PoolB4FACs_L4_Rep1.h5ad
 
diff --git a/testdata/performance_test_pbmc_2c.sh b/testdata/performance_test_pbmc_2c.sh
@@ -13,5 +13,5 @@
 echo "My SLURM_ARRAY_TASK_ID: " $SLURM_ARRAY_TASK_ID
 echo 'pbmc'
 source activate solo-sc
-solo -p -a -g -r 2 --set-reproducible-seed "$SLURM_ARRAY_TASK_ID" -o results_pbmc_"$SLURM_ARRAY_TASK_ID" ../solo_params_example.json 2c.h5ad
+solo -p -a -g -r 2 --set-reproducible-seed "$SLURM_ARRAY_TASK_ID" -o results_pbmc_"$SLURM_ARRAY_TASK_ID" -j ../solo_params_example.json -d 2c.h5ad