ancombc tweaks for clarity #50

	name: deploy-book

	# Only run this when the main branch changes
	on:
	push:
	branches:
	- main
	pull_request:

	# This job installs dependencies, builds the book, and pushes it to `gh-pages`
	jobs:
	deploy-book:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2

	# Install dependencies
	- name: Set up Python 3.8
	uses: actions/setup-python@v2
	with:
	python-version: 3.8

	- name: Get latest QIIME 2 Environment
	shell: bash
	run: \|
	wget https://raw.githubusercontent.com/qiime2/distributions/dev/latest/passed/qiime2-tiny-ubuntu-latest-conda.yml


	- uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: qiime2
	environment-file: qiime2-tiny-ubuntu-latest-conda.yml
	auto-activate-base: false

	- name: Install dependencies
	shell: bash -e -l {0}
	run: \|
	pip install -r requirements.txt

	# Build the book
	- name: Build the book
	shell: bash -e -l {0}
	run: \|
	jb build q2-metagenomics/book/

	# Push the book's HTML to github-pages
	- name: GitHub Pages action
	uses: peaceiris/[email protected]
	if: ${{ github.ref == 'refs/heads/main' }}
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: ./q2-metagenomics/book/_build/html

Provide feedback