Remove deprecations and add docstring to BaseImagingExtractorInterface
#5639
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| name: Deploy tests | |
| on: | |
| pull_request: | |
| types: [synchronize, opened, reopened, ready_for_review] | |
| # Synchronize, open and reopened are the default types for pull request | |
| # We add ready_for_review to trigger the check for changelog and full tests when ready for review is clicked | |
| merge_group: | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| load_python_and_os_versions: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| ALL_PYTHON_VERSIONS: ${{ steps.load_python_versions.outputs.python_versions }} | |
| ALL_OS_VERSIONS: ${{ steps.load_os_versions.outputs.os_versions }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - id: load_python_versions | |
| run: echo "python_versions=$(cat ./.github/workflows/all_python_versions.txt)" >> "$GITHUB_OUTPUT" | |
| - id: load_os_versions | |
| run: echo "os_versions=$(cat ./.github/workflows/all_os_versions.txt)" >> "$GITHUB_OUTPUT" | |
| assess-file-changes: | |
| uses: ./.github/workflows/assess-file-changes.yml | |
| detect-changelog-updates: | |
| needs: assess-file-changes | |
| if: ${{ needs.assess-file-changes.outputs.SOURCE_CHANGED == 'true' && github.event.pull_request.draft == false }} | |
| name: Auto-detecting CHANGELOG.md updates | |
| runs-on: ubuntu-latest | |
| steps: | |
| - if: ${{ needs.assess-file-changes.outputs.CHANGELOG_UPDATED == 'true' }} | |
| run: echo "CHANGELOG.md has been updated." | |
| - if: ${{ needs.assess-file-changes.outputs.CHANGELOG_UPDATED == 'false' }} | |
| run: | | |
| echo "CHANGELOG.md has not been updated." | |
| 0 | |
| run-tests: | |
| needs: [assess-file-changes, load_python_and_os_versions] | |
| if: ${{ needs.assess-file-changes.outputs.SOURCE_CHANGED == 'true' }} | |
| uses: ./.github/workflows/testing.yml | |
| secrets: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| S3_GIN_BUCKET: ${{ secrets.S3_GIN_BUCKET }} | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: # Ternary operator: condition && value_if_true || value_if_false | |
| python-versions: ${{ github.event.pull_request.draft == true && '["3.9"]' || needs.load_python_and_os_versions.outputs.ALL_PYTHON_VERSIONS }} | |
| os-versions: ${{ github.event.pull_request.draft == true && '["ubuntu-latest"]' || needs.load_python_and_os_versions.outputs.ALL_OS_VERSIONS }} | |
| # If the conversion gallery is the only thing that changed, run doctests only | |
| run-doctests-only: | |
| needs: [assess-file-changes, load_python_and_os_versions] | |
| if: ${{ needs.assess-file-changes.outputs.CONVERSION_GALLERY_CHANGED == 'true' && needs.assess-file-changes.outputs.SOURCE_CHANGED != 'true' }} | |
| uses: ./.github/workflows/doctests.yml | |
| with: # Ternary operator: condition && value_if_true || value_if_false | |
| python-versions: ${{ github.event.pull_request.draft == true && '["3.9"]' || needs.load_python_and_os_versions.outputs.ALL_PYTHON_VERSIONS }} | |
| os-versions: ${{ github.event.pull_request.draft == true && '["ubuntu-latest"]' || needs.load_python_and_os_versions.outputs.ALL_OS_VERSIONS }} | |
| run-live-service-tests: | |
| needs: [assess-file-changes, load_python_and_os_versions] | |
| if: ${{ needs.assess-file-changes.outputs.SOURCE_CHANGED == 'true' }} | |
| uses: ./.github/workflows/live-service-testing.yml | |
| secrets: | |
| DANDI_API_KEY: ${{ secrets.DANDI_API_KEY }} | |
| with: # Ternary operator: condition && value_if_true || value_if_false | |
| python-versions: ${{ github.event.pull_request.draft == true && '["3.9"]' || needs.load_python_and_os_versions.outputs.ALL_PYTHON_VERSIONS }} | |
| os-versions: ${{ github.event.pull_request.draft == true && '["ubuntu-latest"]' || needs.load_python_and_os_versions.outputs.ALL_OS_VERSIONS }} | |
| check-final-status: | |
| name: All tests passing | |
| if: always() | |
| needs: | |
| - run-tests | |
| - run-doctests-only | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Decide whether all jobs succeeded or at least one failed | |
| uses: re-actors/alls-green@release/v1 | |
| with: | |
| allowed-skips: run-tests, run-doctests-only | |
| jobs: ${{ toJSON(needs) }} |