fix typo #77
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| on: [push, pull_request] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| timeout-minutes: 30 | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.label }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # - {os: windows-latest, r: 'devel' } | |
| # - {os: windows-latest, r: 'release' } | |
| # - {os: windows-latest, r: 'oldrel' } | |
| # - {os: macOS-14, r: 'devel' } | |
| # - {os: macOS-latest, r: 'release' } | |
| # - {os: macOS-latest, r: 'oldrel' } | |
| - {os: ubuntu-latest, r: 'devel' } | |
| - {os: ubuntu-latest, r: 'release' } | |
| # - {os: ubuntu-latest, r: 'oldrel' } | |
| # - {os: ubuntu-latest, r: 'oldrel-1' } | |
| # - {os: ubuntu-latest, r: 'oldrel-2' } | |
| # - {os: ubuntu-latest, r: '3.5' } | |
| # - {os: ubuntu-latest, r: 'release' , language: ko, label: ko } | |
| # - {os: ubuntu-latest, r: 'release' , language: zh_CN, label: zh_CN } | |
| # - {os: ubuntu-latest, r: 'release' , language: zh_TW, label: zh_TW } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| ## Test in other locale (optional) | |
| LANGUAGE: ${{ matrix.config.language }} | |
| ## R CMD check | |
| _R_CHECK_CRAN_INCOMING_: false | |
| _R_CHECK_LENGTH_1_CONDITION_: true | |
| _R_CHECK_LENGTH_1_LOGIC2_: true | |
| _R_CHECK_MATRIX_DATA_: true | |
| _R_CHECK_SUGGESTS_ONLY_: true | |
| _R_CHECK_S3_METHODS_SHOW_POSSIBLE_ISSUES_: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Install additional LaTeX packages | |
| run: | | |
| tlmgr --version | |
| ## Additional LaTeX packages needed by BiocStyle: | |
| tlmgr install ae bera bibleref caption changepage enumitem everysel fancyhdr footmisc grfext hobsub marginfix mathtools nowidow parnotes parskip placeins preprint ragged2e setspace soul titlesec xstring | |
| tlmgr list --only-installed | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| capabilities() | |
| parallelly::availableCores(which = "all") | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| ## Verify LANGUAGE settings by generating a translatable error | |
| cat(sprintf("LANGUAGE=%s\n", sQuote(Sys.getenv("LANGUAGE")))) | |
| cat(sprintf("locales: %s\n", sQuote(Sys.getlocale()))) | |
| tryCatch(log("a"), error = conditionMessage) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: | | |
| skip_vignettes <- (getRversion() < "4.0.0") | |
| rcmdcheck::rcmdcheck( | |
| build_args = if (skip_vignettes) "--no-build-vignettes" else "--compact-vignettes=both", | |
| args = c("--no-manual", "--as-cran", if (skip_vignettes) "--ignore-vignettes"), | |
| error_on = "error", | |
| check_dir = "check" | |
| ) | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |