GHA: modernize

ccagc · Oct 27, 2021 · 25903d5 · 25903d5
1 parent cf1d045
commit 25903d5
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Showing 2 changed files with 28 additions and 23 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -14,28 +14,31 @@ jobs:
       fail-fast: false
       matrix:
         config:
-#          - {os: windows-latest, r: 'devel'   }
-          - {os: windows-latest, r: 'release' }
-#          - {os: macOS-latest,   r: 'devel'   }
-          - {os: macOS-latest,   r: 'release' }
-          - {os: ubuntu-20.04,   r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
-          - {os: ubuntu-20.04,   r: 'oldrel',  rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
-          - {os: ubuntu-20.04,   r: '3.6',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
-          - {os: ubuntu-20.04,   r: '3.3',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
+          - {os: windows-latest, r: release }
+          - {os: macOS-latest,   r: devel   }
+          - {os: macOS-latest,   r: release }
+          - {os: ubuntu-20.04,   r: devel   }
+          - {os: ubuntu-20.04,   r: release }
+          - {os: ubuntu-20.04,   r: oldrel  }
+          - {os: ubuntu-20.04,   r: 3.6     }
+          - {os: ubuntu-20.04,   r: 3.3     }
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      RSPM: ${{ matrix.config.rspm }}
+      RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
       ## R CMD check
+      _R_CHECK_CRAN_INCOMING_: false
       _R_CHECK_LENGTH_1_CONDITION_: true
       _R_CHECK_LENGTH_1_LOGIC2_: true
       _R_CHECK_MATRIX_DATA_: true
-      _R_CHECK_CRAN_INCOMING_: false
+      _R_CHECK_SUGGESTS_ONLY_: true
 
     steps:
       - uses: actions/checkout@v2
 
+      - uses: r-lib/actions/setup-pandoc@master
+
       - uses: r-lib/actions/setup-tinytex@v1
 
       - name: Install additional LaTeX packages
@@ -44,14 +47,12 @@ jobs:
           ## Additional LaTeX packages needed by BiocStyle:
           tlmgr install ae bera bibleref caption changepage enumitem everysel fancyhdr footmisc grfext hobsub marginfix mathtools nowidow parnotes parskip placeins preprint ragged2e setspace soul titlesec xstring
           tlmgr list --only-installed
-          
+
       - uses: r-lib/actions/setup-r@master
         with:
           r-version: ${{ matrix.config.r }}
 
-      - uses: r-lib/actions/setup-pandoc@master
-
-      - name: Query dependencies
+      - name: Query R package dependencies
         run: |
           install.packages('remotes')
           saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
@@ -66,32 +67,37 @@ jobs:
           key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
           restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
-      - name: Install system dependencies (Linux)
+      - name: Install R package system dependencies (Linux)
         if: runner.os == 'Linux'
         env:
           RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
         run: |
           Rscript -e "remotes::install_github('r-hub/sysreqs')"
           sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
           sudo -s eval "$sysreqs"
-          sudo apt-get install libcurl4-openssl-dev
+          sudo apt install -y libcurl4-openssl-dev
 
-      - name: Install dependencies
+      - name: Install R package dependencies
         run: |
           remotes::install_deps(dependencies = TRUE)
+          install.packages(".", repos = NULL, type = "source")  ## self vignette engine
+        shell: Rscript {0}
+
+      - name: Install 'rcmdcheck'
+        run: |
           remotes::install_cran("rcmdcheck")
+          library(rcmdcheck)  ## triggers an error, if installation failed
         shell: Rscript {0}
 
       - name: Session info
         run: |
           options(width = 100)
+          capabilities()
           pkgs <- installed.packages()[, "Package"]
           sessioninfo::session_info(pkgs, include_base = TRUE)
         shell: Rscript {0}
 
       - name: Check
-        env:
-          _R_CHECK_CRAN_INCOMING_: false
         run: |
           skip_vignettes <- (getRversion() < "4.0.0")
           rcmdcheck::rcmdcheck(build_args = if (skip_vignettes) "--no-build-vignettes", args = c("--no-manual", "--as-cran", if (skip_vignettes) "--ignore-vignettes"), error_on = "warning", check_dir = "check")

diff --git a/.github/workflows/covr.yaml b/.github/workflows/covr.yaml
@@ -4,7 +4,7 @@ name: covr
 
 jobs:
   covr:
-    if: "! contains(github.event.head_commit.message, '[ci skip]')"    
+    if: "! contains(github.event.head_commit.message, '[ci skip]')"
 
     runs-on: ubuntu-20.04
 
@@ -46,20 +46,19 @@ jobs:
           key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
           restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
-      - name: Install system dependencies (Linux)
-        if: runner.os == 'Linux'
+      - name: Install system dependencies
         env:
           RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
         run: |
           Rscript -e "remotes::install_github('r-hub/sysreqs')"
           sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
           sudo -s eval "$sysreqs"
-          sudo apt-get install libcurl4-openssl-dev
 
       - name: Install dependencies
         run: |
           install.packages(c("covr", "sessioninfo"))
           remotes::install_deps(dependencies = TRUE)
+          install.packages(".", repos=NULL, type="source")
         shell: Rscript {0}
 
       - name: Session info