This github repository contains the data files and analysis code used in "Multi-omic machine learning predictor of breast cancer therapy response" published in Nature:

Link: https://www.nature.com/articles/s41586-021-04278-5

The files are organised into three folders:

• data: which contains all the genomic and transcriptomic data required to perform the analyses described in the paper
• R: contains the R code to reproduce all analyses
• resources: contains additional databases (eg gene lists) which are required by the R scripts.

The predictor machine learning code is currently hosted at: https://github.com/micrisor/NAT-ML

The digitised H&E images are currently hosted at: https://zenodo.org/record/6337925#.Y30d1y-l1Ls